Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1796 ATGAAGAAAACAAGTAGTGATTCATCCTCAAAAGTGGATCGCAAGACCATAGAAAGGAATCGCAGAATTCACATGAAAGCACTTTGCTTCAAGCTCGCTTCTCTTATTCCTTCACACTACTTAAAACAAACGAAGGACATGATATCGCAGCAGGACCAGCTGGATATAGCAGCGAGCTACATAAAGAATCTGGCGGAGAAACTGGAGAAGCTGAAGGGGAAGAAGGAGGAAGCCATGAAATTAAAGGAAACAACAAGCCGTGATAACAAGGGAATTATGGAGAACATGTTCATGGATTCGAATCTGCCACTTCTTGAGCTCAGAGACTTGGGTTCCAGCATAGAAGTGATGCTCATCAGCGGATTGAACAGAAACTTCATGTTGTATGAAGTAATTAGCGTCCTCGAAGAAGAAGGAGCAGAAGTTGTGAGCGCAAGCTTTTCCACTGTTGGGGATAAGATATTCCACACCGTTCATGCCCAGGTGAAAATATCAAGAGTTGGGGTAGAAACTACAAGAGTGTATCAGAGGCTTCTTGATCTGATCGCTCCACTTAAAAGCTGGGAGTATTTTTAA 576 0.4288 MKKTSSDSSSKVDRKTIERNRRIHMKALCFKLASLIPSHYLKQTKDMISQQDQLDIAASYIKNLAEKLEKLKGKKEEAMKLKETTSRDNKGIMENMFMDSNLPLLELRDLGSSIEVMLISGLNRNFMLYEVISVLEEEGAEVVSASFSTVGDKIFHTVHAQVKISRVGVETTRVYQRLLDLIAPLKSWEYF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1796 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 167 IPR015660 -
Lele21g1796 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 76 IPR036638 GO:0046983
Lele21g1796 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Lele21g1796 191 Coils Coil 57 88 - -
Lele21g1796 191 FunFam Transcription factor bHLH162 1 92 - -
Lele21g1796 191 SMART finulus 15 70 IPR011598 GO:0046983
Lele21g1796 191 Gene3D - 1 92 IPR036638 GO:0046983
Lele21g1796 191 Pfam Helix-loop-helix DNA-binding domain 13 64 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1796 Lele-ChrLele21 25621275 25622156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1796 4 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.574 9.35e-28 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele21g1796 HLH 2.5e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0517 19 2981591 3006195 Lele21g1796 21 25621275 25622156 CCT
Lele21g1796 21 25621275 25622156 Lele22g1772 22 22941374 22942132 ECH
Lele21g1796 21 25621275 25622156 Lele21g1796 21 25621275 25622156 ECH
Lele21g1796 21 25621275 25622156 Lele23g0212 23 1411059 1412346 hybridization
Lele21g1796 21 25621275 25622156 Lele24g1732 24 22590536 22591291 hybridization