Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1767 ATGGCGGACTCAACCTCATCTATCACTGACAAGACTGGTCCCTCTTCTGATTTAAAACATAACAGGGATTATTCCACTGCAATCTTAGAACGTAAGAAGGCTCCCAACCGTCTTGTTGTTGATGAGGCTATTAATGATGACAATTCTGTGGTAACTTTGCATCCTTCTACAATGGAAAAGCTTCAGTTTTTCCGAGGGGACACTGTTCTGATAAAGGGGAAGAAGCGAAGGGACACAGTTTGCATTGTTCTTACTGATGAGCAATGTGAAGAACCAAAAGTTAGGATGAATAAAGTTGTGCGGTCTAATCTTAGAGTACGACTTGGCGATGTGGTATCTGTCCATCAATGTGCCGATGTGAAATATGGGAAGCGGGTTCACATTCTTCCAATTGATGATACTATAGAGGGTGTCACTGGCAACTTGTTTGATGCATATCTCAAGCCATACTTTATGGAGGCCTACCGACCTTTGAGAAAAGGTGATCTCTTTCTTGTAAGGGGTGGGATGCGAAGTGTTGAATTCAAAGTAATAGAGACAGATCCTGGTGAATACTGTGTTGTGGCACCAGACACTGAAATCTTCTGTGAAGGAGAACCCATCAAACGTGAAGATGAAGAGAGATTAAACGAAGTCGGCTATGATGATGTAGGTGGTGTTAGGAAGCAAATGGCTCAAATCCGTGAGTTAGTGGAGCTTCCTCTTAGACACCCACAGCTCTTCAAATCCATTGGTGTTAAGCCTCCAAAAGGAGTCTTGCTTTATGGACCACCTGGTTCTGGAAAGACTCTGATTGCTAGAGCAGTCGCTAATGAAACAGGCGCATTCTTCTTTTTGATCAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAACTTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATTCCCCTTCTATAATTTTCATTGATGAATTAGATTCAATTGCTCCAAAGAGAGAAAAGACACATGGGGAGGTGGAGAGGAGAATTGTCTCACAACTTTTGACTCTAATGGATGGCCTCAAGGCCAGGTCACATGTTATTGTTATAGGAGCCACCAATAGACCCAATAGCATTGATCCTGCCTTGAGGAGATTTGGGAGATTTGATCGAGAGATTGATATTGGTGTGCCAGATGAAGTTGGAAGATTGGAGGTTCTTAGGATTCACACCAAAAATATGAAACTTTCAGATGATGTTGATCTCGAAAGAGTTGCTAGAGATACCCATGGATATGTTGGCGCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATTCGGGAGAAAATGGATGTCATTGACTTGGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGTCTGTGACAAATGATCACTTCCAAACTGCTTTAGGTGCTTCAAATCCATCAGCTTTGCGTGAAACAGTTGTGGAGGTTCCCAATGTTTCCTGGGACGATATTGGGGGCTTGGAGAATGTTAAAAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCATCCTGAAAAGTTTGAGAAATTTGGCATGTCACCTTCAAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTTCTGGCGAAAGCAATTGCTAATGAATGCCAAGCCAACTTTATAAGTGTAAAAGGACCTGAACTGCTAACAATGTGGTTTGGCGAAAGTGAGGCAAATGTTCGTGAAATATTTGACAAGGCCCGCCAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGCGTGGCAGTTCCACAGGAGATGCTGGAGGTGCTGCAGATAGGGTTTTGAACCAACTATTAACAGAAATGGATGGAATGACAGCTAAAAAAACAGTTTTCATTATTGGGGCAACAAACAGGCCTGACATTATAGACCCTGCATTGCTCAGGCCCGGACGTCTGGACCAACTGATATATATCCCATTGCCAGATGAGAATTCACGCCTTCAAATCTTCAAAGCATGTTTGAGGAAGTCACCACTCTCGAAGGATGTTGACCTAGCAGCACTTGCCCGTTTTACTCATGGATTCAGCGGTGCAGACATCACAGAAATTTGTCAAAGAGCCTGCAAATATGCAATCAGAGAAGATATTGAGAAGGATATTGAGAAAGAGAGGAAAAGGAGAGATAACCCTGAAGCTATGGAAGAGGATGAGGATCCCGTTGATGAGGTCCCTGAGATAAAGCCATCACATTTTGAGGAATCCATGAAGTTTGCTCGCAGAAGTGTCAGTGATGCTGATATCAGGAAGTACCAACTCTTTGCTCAGACCTTGCAGCAGTCTCGAGGATTCGGATCAGAATTTCGGTTTGCAGATCGAACTGAGAACACTTTAACTGCAGCTCCAGACCCTTTCTCTTCTACTACTGCTGCAGGAGACGATGATGATCTATACAGTTAA 2451 0.4341 MADSTSSITDKTGPSSDLKHNRDYSTAILERKKAPNRLVVDEAINDDNSVVTLHPSTMEKLQFFRGDTVLIKGKKRRDTVCIVLTDEQCEEPKVRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMEAYRPLRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGVLLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMSVTNDHFQTALGASNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDENSRLQIFKACLRKSPLSKDVDLAALARFTHGFSGADITEICQRACKYAIREDIEKDIEKERKRRDNPEAMEEDEDPVDEVPEIKPSHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTENTLTAAPDPFSSTTAAGDDDDLYS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1767 816 FunFam Transitional endoplasmic reticulum ATPase 15 119 - -
Lele21g1767 816 SUPERFAMILY Cdc48 domain 2-like 119 211 IPR029067 -
Lele21g1767 816 SMART CDC48_2_2 137 203 IPR004201 -
Lele21g1767 816 MobiDBLite consensus disorder prediction 792 816 - -
Lele21g1767 816 Gene3D - 15 119 - -
Lele21g1767 816 MobiDBLite consensus disorder prediction 719 739 - -
Lele21g1767 816 ProSitePatterns AAA-protein family signature. 628 646 IPR003960 GO:0005524|GO:0016887
Lele21g1767 816 Gene3D - 120 216 - -
Lele21g1767 816 FunFam Transitional endoplasmic reticulum ATPase 475 658 - -
Lele21g1767 816 Pfam Cell division protein 48 (CDC48), domain 2 139 202 IPR004201 -
Lele21g1767 816 Pfam Cell division protein 48 (CDC48), N-terminal domain 37 118 IPR003338 -
Lele21g1767 816 PANTHER AAA-FAMILY ATPASE 414 778 - -
Lele21g1767 816 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 38 776 IPR005938 GO:0016787
Lele21g1767 816 CDD AAA 491 658 - -
Lele21g1767 816 FunFam Transitional endoplasmic reticulum ATPase 213 381 - -
Lele21g1767 816 Pfam AAA+ lid domain 680 721 IPR041569 -
Lele21g1767 816 Pfam AAA+ lid domain 404 446 IPR041569 -
Lele21g1767 816 CDD AAA 218 381 - -
Lele21g1767 816 Gene3D - 662 772 - -
Lele21g1767 816 FunFam Cell division control 48 383 474 - -
Lele21g1767 816 SMART CDC48_N_2 37 120 IPR003338 -
Lele21g1767 816 MobiDBLite consensus disorder prediction 1 22 - -
Lele21g1767 816 SMART AAA_5 521 660 IPR003593 -
Lele21g1767 816 SMART AAA_5 248 384 IPR003593 -
Lele21g1767 816 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Lele21g1767 816 Gene3D - 383 474 - -
Lele21g1767 816 Gene3D - 217 381 IPR027417 -
Lele21g1767 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 473 IPR027417 -
Lele21g1767 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 773 IPR027417 -
Lele21g1767 816 Pfam ATPase family associated with various cellular activities (AAA) 252 381 IPR003959 GO:0005524|GO:0016887
Lele21g1767 816 Pfam ATPase family associated with various cellular activities (AAA) 525 658 IPR003959 GO:0005524|GO:0016887
Lele21g1767 816 SUPERFAMILY ADC-like 34 117 IPR009010 -
Lele21g1767 816 Gene3D - 475 658 IPR027417 -
Lele21g1767 816 FunFam Cell division control 48 120 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1767 Lele-ChrLele21 25393919 25398143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1767 454 717 Calmodulin-binding Proteins AT3G56690 48.106 1.32e-78 272