Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1746 ATGACAGTTATGACAGTTATAACTCTTAGGAGCAAAGCCATCCCCACCTTGTCGTCACATTCCAAAGAGACCGATATTCTTAAAGCACATACTACATTCACAACGCTTCACAACCATCATCCTTCATCCCTCACACTCACAGAGCTAGCATCAGCCATGGATCTCAACCCTGGAAACTTCCCTCTTCTCTCCTCCTTCATGTCCCGTCTCCCTCCTCTCGCTCCCACCGCCGCCTCTTCCAGTTCTGAGCTCTACGACATCGAACAGCCCCGCTTCCCTCCACCCTCCGATCCCTCTTCCTCATCCTCTTCCGGTATCAAAAATCCTGAACTCGTTGCCCAGATGCCCCGCATCACTGACCCGAAACTCTTGGCTTCCATTACCCGCACCATCTACGACGTCGCTCAGACCCGATCCATGCTCAGGATCCTCGGCGACCGACCTGACCATGAATCCGTCGACAATGCCAAGGCCAAGCTCGCTGATTTGGATGCCCATTTGTCCCGACAGCTGGAGGAGATCGTGCTCTCTCCTAAACCTGCTCATCTCGAAACCCATCAATGGCGGAGTCAGCAGACGGAGAAAGAGAAAGAGTGCAGGAAATTAGCGGAGGATGAGAAGCGAGTGTATAAAGCAGTGATACAATTGGATGAGATGCACGATGCGTACGAGAAGTTGCTCAAGGGCGCGGAGAAAAGATTGGAAGCGATTTATAGTTCCGGCGACGGAGCAGCAGATCCTGAGGAAGAGAAGTCGGAGACGGAGGAGGTCAATGAAGAGGTGGTCGGGATTCTTAAAAAGGCCTATGGACAAGGGATAGAGAGAAGTGATCTTTCGAATCGCGGCCTGAGGTTGCTTCCCGAGGCCTTTTGGCGGATTTCAGGGTTGTTGGTGCTTGATATTTCCACCAATCAGCTGACGGAGATTCCTGACGCGGTTGCCGGGTTGCAAAACCTTGAGGAGCTTAACGCATCTGCAAATCATTTGGAATCACTTCCGGATTCAATTGGCTTGCTTCAAAAGTTGAAAATCCTGAATGTCTCTACAAACAAACTCACCGCCCTTCCTGACTCCATCTCCCAGTGCAGATCATTGGTGGAGTTGGATGCTAGCTTCAACAGTCTCAGGTATTTGCCTACAAATATTGGGTATGAATTGCAGAACTTGAAGAAGCTGTTGATTCATCTCAACAAACTTCGGTCGCTTCCCTCATCTGTTTGTGAGATGAGATCGTTGCGCTATCTAGATGCCCATTTCAATGAGCTGAATGGACTTCCAAGCGCATTTGGAAGATTGACTAACCTTGAAGTGCTCGACCTGAGCAGTAATTTCGCCGACCTTCAAGAACTTCCGGCGACATTCTGTGATCTGGTTAACCTCAGGGAGTTGGATCTAAGCAACAACCAGATCAGTGAACTTCCAGACACATTCGGCCGGCTGGAGAATTTGAAGAAACTAAACTTGGAGCAGAACCCTCTGGAAGTGCCGCCAAAAGAGGTAGTGAGGCAAGGAGCTCAAGGCGTGAGGAATTACATGACAACAAGGTTGGTGAACATATTAAACGAGGAAGAAAGGAACAGGGTGGCGATGCAAGAACAAGCCGAGATGGGGTGGTTGTCGCGAAGCACCTCCTGGTTGAAGAACGTCTCTGAGAATGTTGCAGAATATGTCACGTCTCCCAAGAGTGGTACTCAAAAAGTGGCTTATCTTAATGAGCAGCTATAA 1725 0.4945 MTVMTVITLRSKAIPTLSSHSKETDILKAHTTFTTLHNHHPSSLTLTELASAMDLNPGNFPLLSSFMSRLPPLAPTAASSSSELYDIEQPRFPPPSDPSSSSSSGIKNPELVAQMPRITDPKLLASITRTIYDVAQTRSMLRILGDRPDHESVDNAKAKLADLDAHLSRQLEEIVLSPKPAHLETHQWRSQQTEKEKECRKLAEDEKRVYKAVIQLDEMHDAYEKLLKGAEKRLEAIYSSGDGAADPEEEKSETEEVNEEVVGILKKAYGQGIERSDLSNRGLRLLPEAFWRISGLLVLDISTNQLTEIPDAVAGLQNLEELNASANHLESLPDSIGLLQKLKILNVSTNKLTALPDSISQCRSLVELDASFNSLRYLPTNIGYELQNLKKLLIHLNKLRSLPSSVCEMRSLRYLDAHFNELNGLPSAFGRLTNLEVLDLSSNFADLQELPATFCDLVNLRELDLSNNQISELPDTFGRLENLKKLNLEQNPLEVPPKEVVRQGAQGVRNYMTTRLVNILNEEERNRVAMQEQAEMGWLSRSTSWLKNVSENVAEYVTSPKSGTQKVAYLNEQL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1746 574 SMART LRR_typ_2 409 431 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 432 456 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 386 407 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 339 362 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 293 315 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 363 385 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 316 338 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 480 503 IPR003591 -
Lele21g1746 574 SMART LRR_typ_2 457 479 IPR003591 -
Lele21g1746 574 Gene3D Ribonuclease Inhibitor 382 514 IPR032675 -
Lele21g1746 574 Gene3D Ribonuclease Inhibitor 183 381 IPR032675 -
Lele21g1746 574 PRINTS Leucine-rich repeat signature 457 470 - -
Lele21g1746 574 PRINTS Leucine-rich repeat signature 296 309 - -
Lele21g1746 574 MobiDBLite consensus disorder prediction 81 107 - -
Lele21g1746 574 Pfam Leucine rich repeat 281 329 IPR001611 GO:0005515
Lele21g1746 574 Pfam Leucine rich repeat 426 470 IPR001611 GO:0005515
Lele21g1746 574 FunFam Plant intracellular Ras-group-related LRR protein 2 381 553 - -
Lele21g1746 574 Coils Coil 153 173 - -
Lele21g1746 574 FunFam Plant intracellular Ras-group-related LRR protein 9 195 377 - -
Lele21g1746 574 SUPERFAMILY L domain-like 272 497 - -
Lele21g1746 574 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 386 488 - -
Lele21g1746 574 ProSiteProfiles Leucine-rich repeat profile. 459 480 IPR001611 GO:0005515
Lele21g1746 574 SMART LRR_bac_2 432 453 - -
Lele21g1746 574 SMART LRR_bac_2 362 381 - -
Lele21g1746 574 SMART LRR_bac_2 386 405 - -
Lele21g1746 574 SMART LRR_bac_2 409 428 - -
Lele21g1746 574 SMART LRR_bac_2 293 312 - -
Lele21g1746 574 SMART LRR_bac_2 457 476 - -
Lele21g1746 574 SMART LRR_bac_2 339 358 - -
Lele21g1746 574 SMART LRR_bac_2 316 335 - -
Lele21g1746 574 Coils Coil 213 233 - -
Lele21g1746 574 ProSiteProfiles Leucine-rich repeat profile. 318 339 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1746 Lele-ChrLele21 25249584 25251657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1746 286 549 Receptor kinase-like Gene Family AT5G46330 29.537 1.02e-11 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1087 17 21307545 21312448 Lele21g1746 21 25249584 25251657 CCT
Lele18g0452 18 2644256 2645707 Lele21g1746 21 25249584 25251657 CCT
Lele19g0472 19 2681248 2686046 Lele21g1746 21 25249584 25251657 CCT
Lele20g0981 20 15846733 15848181 Lele21g1746 21 25249584 25251657 CCT
Lele21g1746 21 25249584 25251657 Lele21g1746 21 25249584 25251657 ECH
Lele21g1746 21 25249584 25251657 Lele23g0263 23 1806059 1807878 hybridization
Lele21g1746 21 25249584 25251657 Lele24g1687 24 22236593 22237970 hybridization