Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1726 ATGTCTATCACCTCTATACCTTCCTTCAAGGCCCTGACACTGGCAGAATCACGCCTTCTCTCTCTGCCCTCTGTAATTTCCAACAAAACCCAGCACCCCTTCATCTCCATTCCGTCTAAACCTTTTAAGCTTCAGGCCTCTTGCTTCTATTCCTCCCTCTTTCTACCATCTCTGTCCCTCACTAGGAAAACCCACAATTTATCTGTACTCACATTCGTAGCCCAGACTTCGGACTGGGCTCAACAGGACGAAGACAACACCGTCACTATCGATGAAGAGGAAAATCAAGACGGGGATGACGCAGAAGCTCGTCTTTCGGATTGGGAGGTTGATGGTGAAGGCGCAGGAATTGAGTGTAGCGAGGGCGAAGGAGAGAGTAATGAAGATGATGAATTTTTGAAGGACGGGGGTTTTTCAGAACCACCCGAAGATGCTAAACTTTTTGTTGGTAATTTGCCTTATGATGTTGATAGCCAGAGATTAGCCATGCTTTTTGAGCAGGCTGGAACTGTGGAAATTGCCGAGGTTATTTATAATAGGAGCACTGATCAAAGTCGTGGGTTCGGATTTGTAACCATGAGTACAGTTGAAGAAGGAGAGAAAGCTGTCGAAAAGTTCCACCGCTACGATCTAGATGGAAGACTGTTGACTGTCAACAAGGCTGCTCCAAGAGGAGCACAGCCTGAACGGCCACCGCGGGTCTTTGAACCATCCTTTAGAGTCTACGTGGGCAACTTGCCATGGGATGTTGATAATGGTCGCCTGGAGCAGATTTTCAGCGAGCATGGTAAGGTTGTGAGTGCCCGGGTAGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGTGGCTTTTGA 975 0.479 MSITSIPSFKALTLAESRLLSLPSVISNKTQHPFISIPSKPFKLQASCFYSSLFLPSLSLTRKTHNLSVLTFVAQTSDWAQQDEDNTVTIDEEENQDGDDAEARLSDWEVDGEGAGIECSEGEGESNEDDEFLKDGGFSEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEGEKAVEKFHRYDLDGRLLTVNKAAPRGAQPERPPRVFEPSFRVYVGNLPWDVDNGRLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1726 324 Gene3D - 229 324 IPR012677 -
Lele21g1726 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 229 323 - -
Lele21g1726 324 Gene3D - 74 228 IPR012677 -
Lele21g1726 324 CDD RRM_HP0827_like 146 223 - -
Lele21g1726 324 PANTHER OS02G0815200 PROTEIN 36 319 - -
Lele21g1726 324 CDD RRM_HP0827_like 240 316 - -
Lele21g1726 324 SUPERFAMILY RNA-binding domain, RBD 230 322 IPR035979 GO:0003676
Lele21g1726 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 228 - -
Lele21g1726 324 SUPERFAMILY RNA-binding domain, RBD 141 233 IPR035979 GO:0003676
Lele21g1726 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 317 IPR000504 GO:0003723
Lele21g1726 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Lele21g1726 324 SMART rrm1_1 240 313 IPR000504 GO:0003723
Lele21g1726 324 SMART rrm1_1 146 219 IPR000504 GO:0003723
Lele21g1726 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 311 IPR000504 GO:0003723
Lele21g1726 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1726 Lele-ChrLele21 25114126 25116592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1726 143 321 Eukaryotic Initiation Factors Gene Family AT3G16380 35.638 3.04e-22 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1726 21 25114126 25116592 Lele22g1701 22 22459006 22461656 ECH
Lele21g1726 21 25114126 25116592 Lele21g1726 21 25114126 25116592 ECH
Lele21g1726 21 25114126 25116592 Lele23g0285 23 1952179 1954632 hybridization
Lele21g1726 21 25114126 25116592 Lele24g1670 24 22138933 22141589 hybridization