Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1720 ATGCTTTCTCATGAACCAATTCACGAAGAATTTGATACCCGGTTCCCTCCCTTCTTATATATACCCTCCTTCCCTCCTTCACACTTCTCACACCAATCTTCTTCTTCTTCTTCTTCATTTTACTCTGTTTCAACAATGACTACTACCTTCTTCCTCCTCTGCTTTCTCCTCATCCCAACCCTCATTTCTTCTTCCTCTTTCAACGATCCTGAATCCATCGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTGTCGCTAGGCGGAATTTGGGCTACCTATCATGTGGAACTGGCAATCCTATCGACGATTGCTGGAGGTGCGATCCTAATTGGGAGAAGAACAGGCAGAAGCTAGCCGATTGCGGAATAGGGTTCGGGAAGAACGCCATTGGAGGTAAAAACGGCAGGATTTACGTGGTGACCGACGCCGGCGATGACGATCCGGTGAATCCACGGCCGGGGACTCTCAGGTACGCCGTGATTCGAGACGAACCGTTGTGGATTATATTCGCGAGGGACATGGTGATTCAGTTGAAGGAGGAGTTGATCATGAATTCCTTCAAGACCATCGATGGACGAGGCGCGAGCGTGCACATTGCGGGTGGGCCCTGCATAACGATCCAGTACGTAACCAACATTATAATTCATGGAATTCACATACACGACTGTAAGCAAGGAGGGAACGCTATGGTGAGAAGCTCCCCACGGCACTACGGCTGGAGAACCATATCGGACGGCGATGGCGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTAGATCACTGCTCGCTGTCGAATTGTAAAGACGGTTTAATCGATGCCATTATGGGGTCCACCGCGATAACCATTTCCAACAATTACATGACGCACCATGATAAGGTCATGTTACTGGGTCACAGCGATTCTTATACACAAGACAAGAACATGCAAGTCACCATCGCTTTTAACCACTTTGGAGAAGGCCTCGTTCAAAGAATGCCAAGATGCAGACTTGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAACAGATTCGTGGCACCCAATAACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAAAATGAATGGAGGGGTTGGAATTGGAGATCAGAAGGGGACTTGTTGTTAAACGGTGCGTTTTTCAGGTCATCAGGTGCCGGAGCCTCTTCTAGCTATGCTAGGGCTTCTAGCTTGAGTGCCAGACCATCTTCCCTTGTGGGTTCTCTCACCTCCGGTGCCGGCACCCTCACCTGCAGAAAAGGTTCTCGATGCTGA 1344 0.4874 MLSHEPIHEEFDTRFPPFLYIPSFPPSHFSHQSSSSSSSFYSVSTMTTTFFLLCFLLIPTLISSSSFNDPESIVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQKLADCGIGFGKNAIGGKNGRIYVVTDAGDDDPVNPRPGTLRYAVIRDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIMGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNRFSKEVTKHEDAPENEWRGWNWRSEGDLLLNGAFFRSSGAGASSSYARASSLSARPSSLVGSLTSGAGTLTCRKGSRC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1720 447 SMART amb_all 173 370 IPR002022 -
Lele21g1720 447 SUPERFAMILY Pectin lyase-like 80 441 IPR011050 -
Lele21g1720 447 PANTHER PECTATE LYASE 18-RELATED 65 445 IPR045032 GO:0030570
Lele21g1720 447 Pfam Pectate lyase 182 364 IPR002022 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lele21g1720 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Lele21g1720 447 FunFam Pectate lyase 98 440 - -
Lele21g1720 447 Gene3D - 98 440 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1720 Lele-ChrLele21 25078237 25081230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1720 16 447 Polysaccharide Lyase AT5G63180 76.037 0.0 674