Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1718 ATGGATGGGAGGCGGCATTCAGTTGATATTCCTATTTCGAAAACTCTTATAGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCATCTACAAATTCTATGAGCAAACTTTGCTCTTCGATTGATAATCTACACTGGGAGAACAGTTCGGGCAACGGGATTTCTCTGCGGTTCTTGGACGCTTCTCGCTCTTGTGATTCTGATGATAATGGTGCGTTAAGGTCGAAGAATTTAAGTTGTAGCATGCGCAGAGAGCACGATGCTGTTGATTTTGAATTGAACTGTGGCCATTTCAACTCTAAACTGAAGTCTTGTCCTGAAGGGCAGCAAGATGAAGAACTAGCTTACTCTAATTTGAATCAGGAAGGCAATTCCGGTATTAAGTCGACAAGTGATGGCTGCTTTAGCAACCATAGATGTAAGGAATTAGATATAGCATCTATTATGCCTCCGAGCAACGAGGCAACATCAGGATCATCTAAGTTAGGGACAATTGATCATTCTATGTTGACTAGACAAACTCTATGCAACCATCAAGTGAAACCATCCGAAGTTTTGGGCGAAATTGCAGGTCTTAGAGGTAGTCCATGCCTTTCAGTTGGTGAAGCTTTCTCAGCTTATAGTTCTTCGACGAATATGAATCAAGATGTAGATATTGTAGATGATAATCACAATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATGTATATTCTGATATAGAAGACCGTCCCCTGATATCCTGGCACACCGATGAGATAGCTCTCTATGGACACAAAAACATGAGACACATTGGTGGTGAAATCAGTCCAAATTTTGAAACTCCAAGAAGTTTGTGCATGAAATTCAGGCCAAAATGCTTTAATGATTTGGTTGGACAAAATGTGGTAGCGAGGTCCCTTTTGGGTGCCATCTTTAAGGGAAGGGTGACCTCATTCTATCTCTTCCATGGTCCTCGTGGTACTGGTAAGACATCTGCATCTAGGATTTTCGCTGCTGCACTGAATTGTCTCTCCCTTGAGGAGGAAAAGCCATGTGGTCTGTGCAGAGAGTGTGTTTTGTTCTTTTCTGGTAGAAGTAAAGACGTTAAAGAAATTGATTCTGGGAGACTTAATCGCATTGACAAAGTAAAATCCCTTGTTAAGAATGCAAGCATCCCTCCAGTTTCTTCACGTTTTAAGATATTTATTGTTGATGAGTGCCAGTTGATCCTTGGGGAGACATGGGCAAGTCTTTTGAATAGCATAGAGAGCCTTTCTCAACATGTGGTTTTTATTATGATCACTCCAGACTTGGACAAACTTCCCCGAAGTGCAGTTTCCAGGGCCCAGAGGTATCACTTCCCTAAAATAAAAGATGCGGACATTGCGAGCAGATTGGAAAAAATTTGCATAGCAGAAGGCATTGATTTTGAACAGGATGCTTTGGACTTCATAGCTGCTAAATCCTGTGGTTCACTTAGGGATGCAGAAATCATGCTTGATCAGCTGAGCTTGCTTGGTAAAAAAATCACAATTTCCTTAGCCTATGAGCTGACGGGTATCATTTCAGATGACGAATTGCTTGAATTGCTGGATCTGGCTTTGTCTTCTGACACTTCAAATACTGTTAGAAGAGCGCGAGAGTTAATGAGATCAAGGTTGGATCCTCTACAACTTATATCACACCTGGCAAATCTCATCATGGATATTCTTGCAGGGAAATGTGATGGTGGTGGTTCTGAAGTCAGAATGAGGTTTTCTAGTAGATATAAATCTGAAGCAGACCTTCAGAAGCTAAATCATGCATTAAGAATACTTTCTGAAACGGAGAAGCAATTACGAATTTCCAAGAATCAAACAACATGGTTCACAGTAGCTCTTCTACAGTTAAGCTCTGCTGAACTTTCTTCTGTCGAAGCAAATGATACTAAATTGAGAGATGCATGCAATGGAGATGGTGATTTCTGCCGTACATCATCTACAGGGGATAGCAGGAAGCATCTTGGCTCTGCTCAGTATGATAACAAGTTGTTTAGATTAGGACAACAGGATCACACATTAAGTTCCATATGGCATAAAGCGACAGGGTCATGTGAATCTAACAGACTCAAGACTTTTCTTAGGAAACACGGGAAGTTGTCTTCGCTCTGTGTTAATCACGATCTAGCCATTGCCGAGTTGGATTTCCAGCGTCACAACTACGTCTTTAAGGCTGAGAAGTCATGGAAAATGATTGCCAGTTCCCTGCAGCTTATATTGGGTTGTAACATAGAGCTCAGGATCAATCTTGTGCCTTGTCCTTCTGATTCTAAATATGCCAAGTTGAAGAGGTCATCTCTCAGTTTTTTTAGTTGTTCCCGTAGAATTCATCGAAAAGCCCTCTCAGGCAATGAACAAGGAAGTGAACAAGACTACACTGATCACACCTCACAGAAAGCCATGATGAAGGATAGAACGTGTACATCTGATTGTGGATCTCAGATGCAACAACCTGTGCCTTATCAGGGAATGGAGGTTGTGACAGCTTTGAGAGATGGTGAAGGAAATTTGCTGAGCTCAAGGAAGAGTTTGTTGAATGGTTCGTGTCAAGAGACTTCAAGGACCTCAAGTTCTGGGATTGATTCCTCTAAGGAAGAGGGATTTGATTATGCACACCTAGTTTCATCAAACCCTGATTCAGACTATCAATCAAAATGTTTCCCTCGAACTTTCTGGATTCATAAGAAGAAGTTACGTTCTCCAGATCTATCTCAGTTGGATTTCGAGGGCACCCAACAACAGAAAGAATTTGTTTTATCTATCCCAAATTACACCTGTTCCGAGACATATAGCTATGCCAGCGAACCATGCGTTTTCTCCACCAGCTCTGATAACTGTACCAAAGCCGTCCAAAATGAGAATAGCCCCAAGTTGGATTCAGATTTGCTTTGTTGGAGAACCCCGCGATCTCCCTTGAGGAAGTCATGGCATGTGGGGCTTCAGCAGCATAAGTCGCATGCAGCAGGGAGGTTTCTTTCCTGTACCACTGCTAAGTAG 3036 0.4203 MDGRRHSVDIPISKTLIALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRSCDSDDNGALRSKNLSCSMRREHDAVDFELNCGHFNSKLKSCPEGQQDEELAYSNLNQEGNSGIKSTSDGCFSNHRCKELDIASIMPPSNEATSGSSKLGTIDHSMLTRQTLCNHQVKPSEVLGEIAGLRGSPCLSVGEAFSAYSSSTNMNQDVDIVDDNHNGCGISCCWSKSPRFRESNVYSDIEDRPLISWHTDEIALYGHKNMRHIGGEISPNFETPRSLCMKFRPKCFNDLVGQNVVARSLLGAIFKGRVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEEEKPCGLCRECVLFFSGRSKDVKEIDSGRLNRIDKVKSLVKNASIPPVSSRFKIFIVDECQLILGETWASLLNSIESLSQHVVFIMITPDLDKLPRSAVSRAQRYHFPKIKDADIASRLEKICIAEGIDFEQDALDFIAAKSCGSLRDAEIMLDQLSLLGKKITISLAYELTGIISDDELLELLDLALSSDTSNTVRRARELMRSRLDPLQLISHLANLIMDILAGKCDGGGSEVRMRFSSRYKSEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAELSSVEANDTKLRDACNGDGDFCRTSSTGDSRKHLGSAQYDNKLFRLGQQDHTLSSIWHKATGSCESNRLKTFLRKHGKLSSLCVNHDLAIAELDFQRHNYVFKAEKSWKMIASSLQLILGCNIELRINLVPCPSDSKYAKLKRSSLSFFSCSRRIHRKALSGNEQGSEQDYTDHTSQKAMMKDRTCTSDCGSQMQQPVPYQGMEVVTALRDGEGNLLSSRKSLLNGSCQETSRTSSSGIDSSKEEGFDYAHLVSSNPDSDYQSKCFPRTFWIHKKKLRSPDLSQLDFEGTQQQKEFVLSIPNYTCSETYSYASEPCVFSTSSDNCTKAVQNENSPKLDSDLLCWRTPRSPLRKSWHVGLQQHKSHAAGRFLSCTTAK 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1718 1011 FunFam DNA polymerase III subunit gamma/tau 458 520 - -
Lele21g1718 1011 Gene3D - 278 455 IPR027417 -
Lele21g1718 1011 SUPERFAMILY post-AAA+ oligomerization domain-like 527 630 IPR008921 GO:0003677|GO:0006260
Lele21g1718 1011 Gene3D - 521 633 - -
Lele21g1718 1011 CDD HLD_clamp_pol_III_gamma_tau 457 520 IPR045085 -
Lele21g1718 1011 Pfam DNA polymerase III, delta subunit 300 457 - -
Lele21g1718 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 506 IPR027417 -
Lele21g1718 1011 CDD AAA 298 448 - -
Lele21g1718 1011 Gene3D - 458 520 - -
Lele21g1718 1011 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 285 702 - -
Lele21g1718 1011 FunFam Protein STICHEL-like 1 isoform C 521 634 - -
Lele21g1718 1011 SMART AAA_5 316 476 IPR003593 -
Lele21g1718 1011 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 284 630 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1718 Lele-ChrLele21 25059954 25064931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1718 275 569 Core DNA Replication Machinery Family AT1G21690 23.232 4.67e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1718 21 25059954 25064931 Lele21g1718 21 25059954 25064931 ECH
Lele21g1718 21 25059954 25064931 Lele23g0292 23 2005125 2010087 hybridization
Lele21g1718 21 25059954 25064931 Lele24g1662 24 22095186 22098857 hybridization