Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1712 ATGGCGGGTTCGGCAGCTCTGGCACCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTAGCTCCAGAGTACCGCCCTACCTTGGCTGAGTTCCAAGATCCGATATCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAATATGGAATATGCAAAATTGTTCCCCCCGTGCCACCTTCTTCAAAAAAGACAGCAATTGCAAATCTTAATCGCTCGTTGGCCGCACGAGCTGCTTCTTCTGACTCTTCTAAGTTGAAATCCCAGCCTGCATTCACCACAAGGCAGCAGCAGATCGGGTTTTGCCCTCGGAAGCAACGGCCGGCGCAGCGTCCTGTTTGGCAGAGTGGGGAATACTACACTTTTCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTATCTGAAGAAATGGGCTAAGAAAGGTGGGCTCTCGCCTCTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGTTCGGCTTTTGTTCCCATGAATGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTATCACGGGCAAATGGCTCTCTGTTGAAGTTTATGAGGGAGGAGATTCCAGGTGTTACATCCCCGATGGTGTACGTAGCTATGCTATTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCGCGGGATGCAGCTGTGGCATTCGAGGAAGTGGTCAGAATTCATGGTTATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTACTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTGGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCCAACATTGCGACGCCTGAATGGTTGAGCGTTGCTAAAGATGCTGCTATTAGGAGGGCATCAATAAATTATCCGCCCATGGTCTCACATTTCCAGTTACTTTATGATCTTGCCTTGGCTTTGTGTTCGAGAATTCCTGGGGGCAACAGTGCCGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGACTTGCTTCATGGTCTTGGTAAAGGATCTACTATAGTACTTCTTCCTCGGAGCTCTTCTGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTCTCCCAGTGCCTGCAATTCTGAGGGAGTGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAAGGATTTTATTCAGTAAAAGAGAAGTTTGCTTCTTTGTGTGAAAGGAACAGGGTCTCATTAAGTGTAAATGATAACTTATGCTCTTCAAGTTCTGCTCCACTTCAAAGAGACACTGAAAGAGAGACAAGCCAAGGGGATGGGTTATCAGACCAGAGACTATTTTCATGTGTCACTTGTGGTATATTGAGCTTTGCTTGCGTTGCTATTGTGCAGCCTAGGGAACCAGCAGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAAGCATCAATAAGTTTACACATGCCCATGGAGATGTAACTAAGTCTGAGAAAAACACCTTTGCAGGATGGAAGGTCAAAACGGCCCGAGACTATGATCTTCCTGATCAATCTGTAGGATACCAGGTACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTACTAAAGGACTAAAAGAAACATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCGGAGGAAGATCAGGTTGACCCAGATATTGCAGTTCGTGACAATGATTCTGATGTTATGAACCATCCATCAGGTAGTATAACTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCAATGCAAGTGCAGTCAGGGTTCATGATGATTATGAGCAAAAAGCAAACTCAGAAGGTTGTGATACCACTTCAGGGACTGTGTTTAAGAATACGAGTTGTACCTTAAATTATTCTCAAGATGGTCGTGAAGCTGAAACATCAATGCTTCGTAACTCTGGATGTCCCACTGGTAATAGAAGTGCTTCATTTTTGCCACATTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGTTGAAGTGGAGCAGCAACTTCACCCAATAGGAGGAGCACACATATTACTCCTTTGTCATCCAGATTATCCTAAGGTAGAGACTGAAGCAAGAAATGTGGCAGAAGAATTGGGTATTGATGGCATATGGAAGGATCTTGATTACAGAAATGCGACCCCTGAAGATGAGGAGAGGATCCAGTCGGCTCTGGATAGTGAGGAGGCTATTCCTGGAAATGCAGATTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAACCTTAGCCGATCTCCTCTCTACAGTAAGCAGATGCCTTATAATTCTGTCATATACTATGCATTTGGCCGTTGTACTCCAGCAAGCTCACCCACAGAACCCAAGGTTTACCAAAGAAGATCCGGCAAGCAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGAGAAAGTCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGATCAGAAAGCGCCCACGCAGACAATTTCGCTACTAGAAAATCTGCTAGAAAAAGGAAAACGACTGTGGAGAGTAGAAAAGCTAGGAAAGCCAGTTTTGCTGAGAGAGAATATGTTTCTGATAATTCGATTGAAGAGAAATACAATCCACAGCAAAGGACATATTCTAGAAGCAAGCAAGCCAAATATTTTGACAAAGATGATGCAGCATCAGAAGAGGATTATTCTCCTCTGCAGCGATATGGAAAACTGACAAGAAAGCAAGCCAAATACAGCGAAAGTGATGAAGTTTCAGATGATTCAAGGGATGATAATGCTCAAATGCAGCATGGAAGGAACTTCAAATTCAAAGAACCTAAATTTATTGACAGTGATGTTGTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTAGCAACAAACAAATTGAAGACTGCGAAAGAGATGGAATTTCAGAGGATTCGATGGGTGGCAGTTCTCTTAAGCGGCGGAGGAAGACTAGTAAAAGGCAGCCAGCCAAATATGTTGCTAAAGATGTAACTTCTGATGACCAAATGGAGGATCATTTTCAGAAGCAGCAAAGAAGGATTCCTAAAAGCAGACAAGCCAAATACCTTGATAGAGAAGATATCATGGTATCTGATGACCAACTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGCAGGCGAGCCAAATACCTCGCTGCAGAGGATATTACACGTGATGACCAAATGGAGGACCATTCTGGCAAGTGTCTTAGGAGGATTCCTAAAAGCAGACAAGGTAAATGCCTCGTTGAGGAAAATGTGATGTCTGATGAGCAATTGGAGGACCACTTTCAGAAGCCACGTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCAAGTTAAAAGCATGGATGAAGAAGACATAAATTCTGATGATCAAATGGAGGATTCATCTCATCAACAGCGTAGGAGGATTCTTCGAAGCCAGCAATCTAAGTTAGAGGCACGGCAAGAAATGAAACAATCTAACTCTTGCCGTGTGAAAGAACAGACATCCCAGCCTCTAAAACGAGGCGCTCAGCTGCTAGTAAAACCAAAGACTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAGTCAACCTAATAACTTCAGAGATTTTAACTTGTGTTCAGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGTACCAAAAGTTGAGGAGCCTGAAGCAAAACCAAAAGGAAAGGTAACCCAAAGGAAGAAGGTGAACAATGCAACAGCTTTGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGTTGCACTATGAGTTTTAACTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGCGGGAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCTCGTACTGAGCATATTCGAGTGCATACTGGGGCCCGTCCATATGTTTGTGCTGAGCTAGGGTGTGGTCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACTGGCCATTCAGCAAAGAAGAGTCGTTAA 4683 0.439 MAGSAALAPEPNSEVFSWLKSLPLAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLNRSLAARAASSDSSKLKSQPAFTTRQQQIGFCPRKQRPAQRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPMNGRKYREAGEGMTLGETAWNMRGVSRANGSLLKFMREEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLSVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGNSAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNDLLHGLGKGSTIVLLPRSSSDISVCSKLRVGSQQLKVNPGYSPSACNSEGVNSSKGFVSDDLVFSRTTQVKGFYSVKEKFASLCERNRVSLSVNDNLCSSSSAPLQRDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFTHAHGDVTKSEKNTFAGWKVKTARDYDLPDQSVGYQVQAEDQSHEVALRTKGLKETSALGLLASAYGNSSDSEEDQVDPDIAVRDNDSDVMNHPSGSITQNMSSLPSHFQDCNASAVRVHDDYEQKANSEGCDTTSGTVFKNTSCTLNYSQDGREAETSMLRNSGCPTGNRSASFLPHSDEDSSRLHVFCLEHAVEVEQQLHPIGGAHILLLCHPDYPKVETEARNVAEELGIDGIWKDLDYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRCTPASSPTEPKVYQRRSGKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKVLHGWSLPDKKIERSESAHADNFATRKSARKRKTTVESRKARKASFAEREYVSDNSIEEKYNPQQRTYSRSKQAKYFDKDDAASEEDYSPLQRYGKLTRKQAKYSESDEVSDDSRDDNAQMQHGRNFKFKEPKFIDSDVVSDDTMGYDSDSQLRRELSNKQIEDCERDGISEDSMGGSSLKRRRKTSKRQPAKYVAKDVTSDDQMEDHFQKQQRRIPKSRQAKYLDREDIMVSDDQLEHRIHKQQRSKGRRAKYLAAEDITRDDQMEDHSGKCLRRIPKSRQGKCLVEENVMSDEQLEDHFQKPRGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKQVKSMDEEDINSDDQMEDSSHQQRRRILRSQQSKLEARQEMKQSNSCRVKEQTSQPLKRGAQLLVKPKTSQKMKQPPRVQKSQPNNFRDFNLCSEEEEEGGPSTRLRKRVPKVEEPEAKPKGKVTQRKKVNNATALKVSKTKDEEAEYECDIDGCTMSFNSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAELGCGQTFRFVSDFSRHKRKTGHSAKKSR 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1712 1560 Gene3D Classic Zinc Finger 1419 1468 - -
Lele21g1712 1560 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Lele21g1712 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1470 1492 IPR013087 -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 690 705 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1249 1264 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1106 1129 - -
Lele21g1712 1560 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Lele21g1712 1560 Pfam jmjN domain 26 59 IPR003349 -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1388 1421 - -
Lele21g1712 1560 Gene3D Classic Zinc Finger 1469 1552 - -
Lele21g1712 1560 SMART cupin_9 196 365 IPR003347 -
Lele21g1712 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1516 1550 IPR036236 -
Lele21g1712 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Lele21g1712 1560 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Lele21g1712 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Lele21g1712 1560 Gene3D Cupin 18 369 - -
Lele21g1712 1560 SUPERFAMILY Clavaminate synthase-like 191 379 - -
Lele21g1712 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1484 1526 IPR036236 -
Lele21g1712 1560 SMART c2h2final6 1468 1492 IPR013087 -
Lele21g1712 1560 SMART c2h2final6 1498 1522 IPR013087 -
Lele21g1712 1560 SMART c2h2final6 1445 1467 IPR013087 -
Lele21g1712 1560 SMART c2h2final6 1528 1554 IPR013087 -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1288 1342 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1221 1424 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1021 1179 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 974 989 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1149 1179 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 974 999 - -
Lele21g1712 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1554 IPR013087 -
Lele21g1712 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1559 IPR013087 -
Lele21g1712 1560 SMART JmjN_1 24 65 IPR003349 -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1030 1045 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1370 1387 - -
Lele21g1712 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1468 1497 IPR013087 -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 1057 1096 - -
Lele21g1712 1560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1494 - -
Lele21g1712 1560 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Lele21g1712 1560 FunFam Probable lysine-specific demethylase ELF6 1495 1524 - -
Lele21g1712 1560 MobiDBLite consensus disorder prediction 685 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1712 Lele-ChrLele21 25016207 25026529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1712 1126 1559 C2H2 Transcription Factor Family AT3G48430 38.316 1.56e-68 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele21g1712 JmjC 4.5e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1712 21 25016207 25026529 Lele21g1712 21 25016207 25026529 ECH
Lele21g1712 21 25016207 25026529 Lele23g0299 23 2049515 2057363 hybridization
Lele21g1712 21 25016207 25026529 Lele24g1655 24 22039201 22047168 hybridization