Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1711 ATGGAGTTTTCTGAACCCGAATTAACGGCGGTTTCGAATTCCAAGGAAAACCCAGAATTGGGCTTTCGCTCGGCCTCATCTTTCCCTATTTCTGATCATACTTCGGAAACCTCAGATCTTAATCATCAGGCTGAGGTCGACGCACTTGATGAGGAGTTTCAGAACAAGTTGATTTTGAAGGATAAGGATGAAGAGGGAGAGACTGTGAACAAAGAATATAAATTTGATGGTACTGAGGAGGTGTGTGATAAACACGGTGCTGGGGAATCTTATGAGGTAGATGGGTGGGGTGAATATAACGATAATTGGAATGAAAATGAGGACAATAATTGGACTACGAATGTGAACGGGAATGAGAACGATGAGGATGGTGGAGATTATGATCTAGCTGTCCATGAACTGGAGAGAAAGGAAGAGAGAAGCGGTGATAGCAACCACCAGTATCCGGTGAGGCCTGAAGCTGAAGATTGTGCATTCTATCTGAAGAATGGATCTTGCAAATTCGGATTCAATTGCAAGTTTAATCACCCTGTCAATAGGAAGAAAAATCAGGCCGGTAAAGAGAAGTCAGGAGAGAGAGAAGAATCGACAGATAGATTGGCGCAGGCAGAATGCAAGTATTATCTATCGTCAGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCATTCAAGAGGAAAATGTTCAGTAGCCCCAGTTCTAGAGCTTAATTTTCTTGGTCTGCCTATTCGTCTGGGGGAGAAAGAGTGCCCTTATTACATGCGTACGGGCTCTTGTAAGTATGGAGCAAACTGCAAATTTAATCATCCAGATCCTACAGCTGTCGGAGGAGGTGATCTTCCTGCAAGATATGGTAATGGGGGGTCAATATCATTACAAGGTGCCTCACAGCCATCTGTACCCTGGTCGTCTTCAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTGCTCAAGGCGTTTCTCCCCAAAGTTCTGAATGGAATGTGTATCAGCCACCTGTCTACCTACCTGAGGGGAGCATGCGCCCACCGTCTGCATATGTTATGAACAACCCAGCGATTGAGAAAAATATTTTTATGCATCATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAAAGGCCTGGGGAGCCTGAATGCAGTTACTTTTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGATTACAAAATTACCCTCTTCTACATGCACTCTCAGTGACAAGGGTCTTCCTTTGAGACCAGACCAGAATGTGTGCACGCATTACAGTCGCTATGGAATCTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCCCCCGATAAAGCCGTCACCCTCTACGGGGCCTCCACTTGA 1401 0.4397 MEFSEPELTAVSNSKENPELGFRSASSFPISDHTSETSDLNHQAEVDALDEEFQNKLILKDKDEEGETVNKEYKFDGTEEVCDKHGAGESYEVDGWGEYNDNWNENEDNNWTTNVNGNENDEDGGDYDLAVHELERKEERSGDSNHQYPVRPEAEDCAFYLKNGSCKFGFNCKFNHPVNRKKNQAGKEKSGEREESTDRLAQAECKYYLSSGGCKFGKACKYNHSRGKCSVAPVLELNFLGLPIRLGEKECPYYMRTGSCKYGANCKFNHPDPTAVGGGDLPARYGNGGSISLQGASQPSVPWSSSRTLNETAAFMPMMLSPAQGVSPQSSEWNVYQPPVYLPEGSMRPPSAYVMNNPAIEKNIFMHHQKKMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPRNRITKLPSSTCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPPDKAVTLYGAST 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1711 466 SMART c3hfinal6 428 455 IPR000571 GO:0046872
Lele21g1711 466 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Lele21g1711 466 SMART c3hfinal6 380 407 IPR000571 GO:0046872
Lele21g1711 466 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Lele21g1711 466 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Lele21g1711 466 SUPERFAMILY CCCH zinc finger 203 229 IPR036855 GO:0046872
Lele21g1711 466 Gene3D - 427 462 - -
Lele21g1711 466 MobiDBLite consensus disorder prediction 105 126 - -
Lele21g1711 466 ProSiteProfiles Zinc finger C3H1-type profile. 380 408 IPR000571 GO:0046872
Lele21g1711 466 SUPERFAMILY CCCH zinc finger 246 272 IPR036855 GO:0046872
Lele21g1711 466 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Lele21g1711 466 Gene3D - 339 415 - -
Lele21g1711 466 Gene3D - 119 188 - -
Lele21g1711 466 Gene3D - 189 275 - -
Lele21g1711 466 SUPERFAMILY CCCH zinc finger 150 180 IPR036855 GO:0046872
Lele21g1711 466 SUPERFAMILY CCCH zinc finger 385 410 IPR036855 GO:0046872
Lele21g1711 466 MobiDBLite consensus disorder prediction 105 120 - -
Lele21g1711 466 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Lele21g1711 466 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Lele21g1711 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Lele21g1711 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 431 455 IPR000571 GO:0046872
Lele21g1711 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 226 IPR000571 GO:0046872
Lele21g1711 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 382 407 IPR000571 GO:0046872
Lele21g1711 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Lele21g1711 466 MobiDBLite consensus disorder prediction 1 41 - -
Lele21g1711 466 ProSiteProfiles Zinc finger C3H1-type profile. 428 456 IPR000571 GO:0046872
Lele21g1711 466 MobiDBLite consensus disorder prediction 7 21 - -
Lele21g1711 466 SUPERFAMILY CCCH zinc finger 426 453 IPR036855 GO:0046872
Lele21g1711 466 PANTHER PROTEIN PHOSPHATASE RELATED 31 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1711 Lele-ChrLele21 25010505 25013734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1711 366 458 C2H2 Transcription Factor Family AT3G02830 44.086 1.02e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele21g1711 zf-CCCH 1.6e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1711 21 25010505 25013734 Lele22g1688 22 22353706 22356994 ECH
Lele21g1711 21 25010505 25013734 Lele21g1711 21 25010505 25013734 ECH
Lele21g1711 21 25010505 25013734 Lele23g0300 23 2059678 2062928 hybridization
Lele21g1711 21 25010505 25013734 Lele24g1654 24 22033969 22037555 hybridization