Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1637 ATGATTTCTGGAGCAAGCGGCATCGCTTGGATGGACGAAAACAGGGAAGGAGACGACTCTGCTGCTCCTTCTTCATGGACCAACGTGAACGCTAACATCAGGATCAACAAAAACCAAAACCAGAGCCATTCTGGTTTTGTTCAGAACAAGGACGAGATGGGTTCTCTGTGTGCTCTCAAACCCATGCTTGAAATCGATGACGATTGGTACATCGCGAACCATGGTATCCAAAATCAATCAGATATTATCAGAGACATCACTTTCTCTCCTAACTTCGGTGACCAAGATGGTTTATTGCTGAACCCAGTAGATTCGTCCCATTCATGTTCCCCATCTACCACCGTCTTCAACAATCTCGACCCATCTCAGGTTTCGTACTATCTTCCTCCGAAACCCACCTTATCTTCTCTTCTTAATGTCGTCCCCAGTAACAATCCTTTAGACCATGGTTTTGATGTGGGTTGCGATGTCGGGTTTCTTGAGGCTCAAGCTTCCGGCTCTAACCCTCTGCGAGGCTTCAACGATTTCAGCTCAAATAACAACCAGATAAACCTTCCTAATTTATGCTCCGACCCACAACTCCCAACGTCAGGTATACCGCAGGTAACCGAAAGCAGTTTTTCGGGTTTTCGGGGTTTCGAGGAAGGTCCTGGAAAGCCGCTATTCCTAAATAGACCGATCTTGAGACCCCTCGATTCATTACCTCCATCGGGAGCTCAACCCACTCTATTTCAGAAGAGAGTGGCTTTCCGAAAGAAGCTGGCCAGTAACGATACTCAGAAAGACGGAGGAAAGAGTGAGATCGGAGGGGGCAACGAGAAGAAGAGGAGGATGGGTAACTGGGAAGAGGTGAAAGACGCTAGCTTTGATGGGTCGGGGTTGAACTACGATTCCGATGAGTTGACGGAGAATACGAGGGCCGAGGAGAACGGCAAGAACGGAGGAAACAGCTCGAATGTGAACAGTGCGGTGACTGGTGGTGATGCCGGCGATAAGAAGGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTCGGAAGAAGCTCAATGATAGACTCTATATGTTGAGGTCCGTTGTTCCAAAGATTAGCAAGATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTACCTTAAAGAACTCATACAAAAGATCAATGACCTCAATGTTGAATTGGAGTCAACACCTCCTGGCTCTTCATTGAGTACTCCTGCCCCAAGCTTTCATCCTCTGACACCGACTCCACCAACATTGCCCAGCCGTATGAAGGATGAACTTTGCCCTAGCTCATTGCCAAGCCCTAATGGCCAGCCTGCGAGGATCGAGGTTCGGATGCGCGAAGGAAAAGCTGTGAATATCCACATGTTTTGTGGTCGCAAGCCCGGTCTCTTGCTTTCAGCAATGAAGGCTTTGGACAACCTCGGGTTAGAGATCCATCAAGCTGTTATTAGCTGTTTTAATGGATTTGCCATGGATGTCTTTCGAGCTGAGCAATGGAAGGAAGGTCAAGATGTTCCTAGTCCAGAGCAAATCAAAGCAGTGCTGTTGGAGTCAGCTGGCTACCATGTCTCGAACTAG 1596 0.4825 MISGASGIAWMDENREGDDSAAPSSWTNVNANIRINKNQNQSHSGFVQNKDEMGSLCALKPMLEIDDDWYIANHGIQNQSDIIRDITFSPNFGDQDGLLLNPVDSSHSCSPSTTVFNNLDPSQVSYYLPPKPTLSSLLNVVPSNNPLDHGFDVGCDVGFLEAQASGSNPLRGFNDFSSNNNQINLPNLCSDPQLPTSGIPQVTESSFSGFRGFEEGPGKPLFLNRPILRPLDSLPPSGAQPTLFQKRVAFRKKLASNDTQKDGGKSEIGGGNEKKRRMGNWEEVKDASFDGSGLNYDSDELTENTRAEENGKNGGNSSNVNSAVTGGDAGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELIQKINDLNVELESTPPGSSLSTPAPSFHPLTPTPPTLPSRMKDELCPSSLPSPNGQPARIEVRMREGKAVNIHMFCGRKPGLLLSAMKALDNLGLEIHQAVISCFNGFAMDVFRAEQWKEGQDVPSPEQIKAVLLESAGYHVSN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1637 531 MobiDBLite consensus disorder prediction 306 342 - -
Lele21g1637 531 CDD bHLH_AtAMS_like 341 411 - -
Lele21g1637 531 Pfam Helix-loop-helix DNA-binding domain 345 387 IPR011598 GO:0046983
Lele21g1637 531 MobiDBLite consensus disorder prediction 254 281 - -
Lele21g1637 531 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 212 527 - -
Lele21g1637 531 MobiDBLite consensus disorder prediction 308 325 - -
Lele21g1637 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Lele21g1637 531 Gene3D - 331 401 IPR036638 GO:0046983
Lele21g1637 531 MobiDBLite consensus disorder prediction 399 413 - -
Lele21g1637 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 411 IPR036638 GO:0046983
Lele21g1637 531 MobiDBLite consensus disorder prediction 267 281 - -
Lele21g1637 531 SMART finulus 344 393 IPR011598 GO:0046983
Lele21g1637 531 FunFam BHLH transcription factor 334 402 - -
Lele21g1637 531 CDD ACT_UUR-ACR-like 459 500 - -
Lele21g1637 531 MobiDBLite consensus disorder prediction 399 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1637 Lele-ChrLele21 24348680 24352969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1637 59 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.638 7.00e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele21g1637 HLH 2.2e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1637 21 24348680 24352969 Lele23g0374 23 2664355 2668931 hybridization
Lele21g1637 21 24348680 24352969 Lele24g1580 24 21483946 21484352 hybridization