Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1635 ATGTCATCATCAGAGGTATCGATAAAGGGAAATGGTGTGAATGGGAAGGGAGAAGGCTTTTCTTCTGGTTATAACAATCACGACGATGCTAGGAACGGTACAGAGGGTCAAAATTCTCATTCATTGACCGGGAAAGAAGCAGAAGCGGCGCTTTACAGAGAGCTATGGCATGCCTGTGCTGGTCCTCTTGTTACAGTCCCCCGGGAAGGAGATAGAGTCTTCTATTTTCCTCAGGGACATATCGAGCAGGTTGAGGCGTCCACCAATCAGGTGGCGGACCAGCATATGCCCGTATACGATCTCCCTTCCAAAATCCTGTGTCGGGTGATCCACGTGTTGCTGAAGGCCGAGCCAGACACGGACGAGGTGTTTGCCCAGGTCACATTGGTTCCTGAGACCAATCAAGATGAAAACGCCGTGGAGAAAGAGCCTCCACCACCACCACCACCTCGATTTCACGTTCATTCTTTCTGTAAAACTCTGACCGCCTCGGATACAAGTACTCATGGTGGCTTTTCGGTTCTGAGACGACATGCTGATGAATGCCTTCCTCCTTTGGATATGTCTAAGCAGCCACCTACCCAGGAGTTAGTGGCAAAGGATCTGCATGGAAATGAGTGGCGATTCAGACATATCTTTCGTGGTCAACCACGTAGACACTTGCTCCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTCGTTGCTGGGGACGCCTTTATCTTTCTTAGGGGCGAGAATGGGGAGCTTCGTGTTGGTGTTAGGCGGGCTATGAGACAGCAGGGTAATGTTCCATCTTCAGTGATCTCCTGTCATAGCATGCATCTCGGTGTCCTCGCAACTGCTTGGCATGCCATCTCAACTGGCACAATGTTCACTGTTTATTACAAGCCTAGGACAAGTCCAGCTGAGTTTATTGTTCCATATGAACAATATATGGAGTCTCTAAAAAATAACTACACAATAGGGATGCGATTCAAAATGAGGTTTGAAGGTGAGGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGAGGATCCCAACAGGTGGCAAAATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAATATACCTCGCCCTGAAAGAGTTTCCCCTTGGAAAATAGAGCCTGCTGTTGCTCCTCCAGCTTTGAATCCTCTTCCGATGCCCAGGCCTAAAAGGCCTCGTACTAGTGTGGTTCCATTATCCCCTGACTCTTCTGTTCTTACTCGAGAAGCCTCATCTAAAGTAAGTAAAGACCCTTCACTGGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATACTCGACCTTGAGAGGCAATTTGGCAGAAAGCAACGAGTCTGTTAGTGCAGAGAAGTCTGTTGTGTGGCCATCTGCAGTAGATGATGAAAAGATAGATATGGTTTCCACCTCAAGAAGGTATGAGTCAGAGAGCTGGATGTCAATGGGGAGGCATGAGCCAACATACTCAGATCTATTATCAGGCTTTGGAGCCAGTGGAGATTCTTTTCGTCCACCCTTGGCTGATCAGACTGGCCCTCTGGCTAGTCCTGCTAAAAAGCTTTCGTTGGACCAGGAAGGGAGGTTTAATGCGATGGCCAATTCATGGCCTGTGGGGCCCTCGGGTCTAGCACTAAACCTCCTGGACTCGAATGTCAAGGGTTCTGTGAATGGTGGTGATGTAACATATCAAACCCCATGGAATGTGAGGTATGGTGCATTTGGTGACTACCCTGTTCTCCATGGTCATAAAATCCAGCAGTTACATGGGAATTCGTTGATGCCACCACCATCTACAACCCAATATGAGAGTTCTCGTTCAAGAGAGTTGATGTCAAAACCAGTATCAACCCAAACAAGAGAGCCTGTCAAGTCAAAAGATGGTGATTATAAGCTCTTTGGCTTCTCACTTATCAGTGGATCCGTTACACCTGAGCCATCTGTATCCCAATCCCAAAGAAATGTGACTAGCGAGTCACCAGGTCACATGCATCCTGCATCTAGCAAACCTCATGAAAGTGATCATAAAGCGGAACAATTGGGGGGCTCAAAACCAGCTGATGTAGCTTTTGTTGATAACCCAGAGAAGTCATTGCAAGCATCTCAGACGCATCTGAACGAGGCTCAAGCAAAACCACCAAGTGGTTCTGCTAGGAGTTGCACTAAAGTACACAAGAAGGGAATTGCACTTGGTAGGTCGGTGGACCTCACAAAATTCAGCAACTATGAAGAATTAGTTGTTGAACTAGATCAGCTGTTTGAATTTGGTGGTGAATTGATGTCTCCTAAAAAGGATTGGCTTATTGTCTATACTGATGATGAGGGTGACATGATGCTTGTTGGGGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTATCCCAAAGAGGAGATTCAAAAAATGAGCCCAGATTTGTTTTCCATAGCGTCCAGGACTGTAAAAAGTGGGATCTACTAA 2508 0.4685 MSSSEVSIKGNGVNGKGEGFSSGYNNHDDARNGTEGQNSHSLTGKEAEAALYRELWHACAGPLVTVPREGDRVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVIHVLLKAEPDTDEVFAQVTLVPETNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAISTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDEDPNRWQNSKWRCLKVRWDETSNIPRPERVSPWKIEPAVAPPALNPLPMPRPKRPRTSVVPLSPDSSVLTREASSKVSKDPSLASGFPRVLQGQEYSTLRGNLAESNESVSAEKSVVWPSAVDDEKIDMVSTSRRYESESWMSMGRHEPTYSDLLSGFGASGDSFRPPLADQTGPLASPAKKLSLDQEGRFNAMANSWPVGPSGLALNLLDSNVKGSVNGGDVTYQTPWNVRYGAFGDYPVLHGHKIQQLHGNSLMPPPSTTQYESSRSRELMSKPVSTQTREPVKSKDGDYKLFGFSLISGSVTPEPSVSQSQRNVTSESPGHMHPASSKPHESDHKAEQLGGSKPADVAFVDNPEKSLQASQTHLNEAQAKPPSGSARSCTKVHKKGIALGRSVDLTKFSNYEELVVELDQLFEFGGELMSPKKDWLIVYTDDEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPDLFSIASRTVKSGIY 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1635 835 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Lele21g1635 835 MobiDBLite consensus disorder prediction 410 431 - -
Lele21g1635 835 MobiDBLite consensus disorder prediction 600 639 - -
Lele21g1635 835 MobiDBLite consensus disorder prediction 655 675 - -
Lele21g1635 835 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Lele21g1635 835 Gene3D - 154 259 IPR015300 -
Lele21g1635 835 FunFam Auxin response factor 320 392 - -
Lele21g1635 835 Gene3D - 726 819 - -
Lele21g1635 835 Gene3D - 320 391 - -
Lele21g1635 835 MobiDBLite consensus disorder prediction 707 728 - -
Lele21g1635 835 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele21g1635 835 FunFam Auxin response factor 726 819 - -
Lele21g1635 835 SMART B3_2 157 259 IPR003340 GO:0003677
Lele21g1635 835 MobiDBLite consensus disorder prediction 390 436 - -
Lele21g1635 835 MobiDBLite consensus disorder prediction 655 732 - -
Lele21g1635 835 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 819 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele21g1635 835 SUPERFAMILY CAD & PB1 domains 733 807 - -
Lele21g1635 835 FunFam Auxin response factor 155 259 - -
Lele21g1635 835 MobiDBLite consensus disorder prediction 1 42 - -
Lele21g1635 835 Pfam AUX/IAA family 776 818 IPR033389 -
Lele21g1635 835 Pfam AUX/IAA family 712 766 IPR033389 -
Lele21g1635 835 MobiDBLite consensus disorder prediction 677 693 - -
Lele21g1635 835 MobiDBLite consensus disorder prediction 18 42 - -
Lele21g1635 835 ProSiteProfiles PB1 domain profile. 730 812 IPR000270 GO:0005515
Lele21g1635 835 MobiDBLite consensus disorder prediction 603 631 - -
Lele21g1635 835 CDD B3_DNA 155 257 IPR003340 GO:0003677
Lele21g1635 835 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Lele21g1635 835 MobiDBLite consensus disorder prediction 390 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1635 Lele-ChrLele21 24317287 24321809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1635 1 827 B3 DNA Binding Superfamily AT5G62000 65.176 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele21g1635 AUX_IAA 2.7e-07 CL0072