Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1628 ATGATAATGACAACAACAAGAGAAATGGGAAGAGAACAAAGGCTGTGTTAATCAGCTAAAGTGGATCGAAATCATGGAAAGAGATCAGGTTCTTGCGAAGAAGCGCAAGAGAAAGAAGAAGAAGAGCACTTAATGTTCCCAATCTACTCTGATCGTTCTCAGCAAGATATGTCCGCCATGGTTTCTGCTCTTGCTCAGGTCATTGGGGCTTCCCCTAATGTTTATGATCAGAACCATTTATCTGATAATTTGTCTCAGTCCTCTTCTGAAACTAACTCTGAGCACTGTCTTCAAGCACATCAACATCATCAAGGGAGCACAGGGAAGAGACACTACAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCGGCTGAGATTCGTGATCCCAAGAAAGCCGCCAGAGTTTGGCTCGGAACCTTCGACACGGCGGAGGCGGCCGCCCTTGCTTATGACGAAGCCGCTCTCAAATTCAAAGGGAGCAAAGCTAAGCTCAACTTCCCTGAAAGAGTTCAACTTCAGCCACCACCTTCCATGATGACGACGAGCACGACGTCGTTTCCTTCTTCTTCGGGTGAATTTTCTTTCCTCACAAACCCTCATCATCAACAACCACAACCACCACTTGTTCTTGCTCCTCCGACGACACCATTCTCTTCACAACAACCTTATCATTATAATAATTACCAATATAATCCACATCTTCTGGGAAGTATTGGTGGCGGCGGTCACAGTTTGTTTAATTATTCTCCTCAACAACAACCACCACCTTATACGTCTGTGTCTTCGTCCTCGTCTTCCTCGTATGGAATGTCTCCCCAGCAACATGAACAAGAACAACTTCTACAGTTTTCCATGCAATTTGGAGCTCCCCCGTCTTCTTCTTCTCATCATCCTCCTTCCAATTGGCCATTTCATGAATTTGATGGTCAACGTTGA 939 0.4569 MIMTTTREMGREQRLCXSAKVDRNHGKRSGSCEEAQEKEEEEHLMFPIYSDRSQQDMSAMVSALAQVIGASPNVYDQNHLSDNLSQSSSETNSEHCLQAHQHHQGSTGKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALKFKGSKAKLNFPERVQLQPPPSMMTTSTTSFPSSSGEFSFLTNPHHQQPQPPLVLAPPTTPFSSQQPYHYNNYQYNPHLLGSIGGGGHSLFNYSPQQQPPPYTSVSSSSSSSYGMSPQQHEQEQLLQFSMQFGAPPSSSSHHPPSNWPFHEFDGQR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1628 312 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Lele21g1628 312 MobiDBLite consensus disorder prediction 175 205 - -
Lele21g1628 312 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lele21g1628 312 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lele21g1628 312 MobiDBLite consensus disorder prediction 75 103 - -
Lele21g1628 312 MobiDBLite consensus disorder prediction 245 301 - -
Lele21g1628 312 MobiDBLite consensus disorder prediction 172 225 - -
Lele21g1628 312 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Lele21g1628 312 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Lele21g1628 312 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Lele21g1628 312 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Lele21g1628 312 MobiDBLite consensus disorder prediction 242 312 - -
Lele21g1628 312 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Lele21g1628 312 MobiDBLite consensus disorder prediction 75 111 - -
Lele21g1628 312 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Lele21g1628 312 PANTHER DNA-BINDING DOMAIN 65 264 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1628 Lele-ChrLele21 24240294 24243413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1628 45 173 AP2-EREBP Transcription Factor Family AT5G61890 64.122 3.46e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele21g1628 AP2 4.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1628 21 24240294 24243413 Lele21g1628 21 24240294 24243413 ECH
Lele21g1628 21 24240294 24243413 Lele05g0636 05 3743641 3744918 ECH
Lele21g1628 21 24240294 24243413 Lele06g0456 06 2798782 2800662 ECH
Lele21g1628 21 24240294 24243413 Lele07g0667 07 3802791 3804717 ECH
Lele21g1628 21 24240294 24243413 Lele08g0469 08 2873322 2874606 ECH
Lele21g1628 21 24240294 24243413 Lele23g0383 23 2773051 2774713 hybridization