Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1537 ATGAAAGATGAAAGTCCCATCAGCAATAATACAACAACAAATTTGCCAAGCAACAACACAGGCAGCCCTGAAAGCCCTTGCTTAAAATCACCATCATCATGCAGCACAACACCAACAACAACAAACAAAGAACAAGATAGATTCCTTCCCATTGCAAATGTTGGGAGGATCATGAAGAAAGTGATGCCTCCGAATGGCAAAATCTCAAAGGACACTAAAGAAACTGTCCAAGAATGTGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGATAAGTGTCAGAGAGAAAAGAGAAAGACCATCAATGGCGATGACATTATCTGGGCCATCACAACGCTTGGCTTTGAGGACTACGTTGATCCTTTGAAATCTTACCTTCAGAAATATAGAGAGATAGGAGAGAAGCTTAATGTTCCCAAACAACAACGTTCTTCTTCTGATCATCATCATCAACAACAACAAAGGCTACAACACAATAATAATAATAATAATAATGCTAATATTAATAATATTAATAATAATAACCTACCTGGTTTAAATAATAGTGTATATTCTTCAACAAGTCTCATTTCTCATCAGCCTCATCCTCATCCTTATGTGACAACGGATCAGACATTTTCGTTACCTTTCTCATCAAATTCAATTCAAAAACAGTTACAGCCCCAAGACAATATGGATTCAGTGGGGCATTGGTAA 702 0.3846 MKDESPISNNTTTNLPSNNTGSPESPCLKSPSSCSTTPTTTNKEQDRFLPIANVGRIMKKVMPPNGKISKDTKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIGEKLNVPKQQRSSSDHHHQQQQRLQHNNNNNNNANINNINNNNLPGLNNSVYSSTSLISHQPHPHPYVTTDQTFSLPFSSNSIQKQLQPQDNMDSVGHW 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1537 233 SUPERFAMILY Histone-fold 45 169 IPR009072 GO:0046982
Lele21g1537 233 MobiDBLite consensus disorder prediction 140 156 - -
Lele21g1537 233 ProSitePatterns NF-YB/HAP3 subunit signature. 79 95 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele21g1537 233 MobiDBLite consensus disorder prediction 157 176 - -
Lele21g1537 233 MobiDBLite consensus disorder prediction 1 44 - -
Lele21g1537 233 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 112 IPR003958 -
Lele21g1537 233 Gene3D Histone, subunit A 38 177 IPR009072 GO:0046982
Lele21g1537 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele21g1537 233 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Lele21g1537 233 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Lele21g1537 233 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Lele21g1537 233 MobiDBLite consensus disorder prediction 140 176 - -
Lele21g1537 233 FunFam Nuclear transcription factor Y subunit B-3 37 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1537 Lele-ChrLele21 23552483 23553184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1537 1 233 CCAAT-HAP3 Transcription Factor Family AT2G13570 54.878 3.92e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele21g1537 CBFD_NFYB_HMF 5.3e-26 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1537 21 23552483 23553184 Lele24g1482 24 20667368 20669964 hybridization