Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1526 ATGTTGCAGCTTGATCCACCCACTGTTTTTGCTTTGATAAGACCGCCTGGACATAATGTTGTTCCACAATGGCCTATGGGCTTCTGTGTTTTTGGAAATGTGGTCATTGCTGCTCGTTATGCCCAACATGTGCATGGACTAAAGCGCGTGTTTATAATTGATTTTTATGTCCCCTATGGGAATGGAACAAATGATGCTTTCTACGATGATCCAGATATATTTTTCCTCTCAACTCACCAAGCTGGAAGCTACCCTGGTACTGGTGATACTACGATGAGAACTGTGTTTGATGAAGTCATTGTGCCTCCTGCTCAAAGGTTTAAGCCAGACATTGTTCTTGTTTCTGCTGGATATGATGCCCATGTTTTGGATCCACTAGCCAATTTACGGGAGGATACAATCTCAAACCTCTTTCATATTCAGTGGCAGACTCATTCCGGGCTCTTCTTGGTGATCGGAGTTTGGATAGGATCAAGGCCATACATTCCCTGTGACGTTCCAAGTGAAAATCAGATCTTGCTTGTAATCAACAGCTTGGAAAGAAATCTTGCAGTGGGGTCTTTAATCTCAGTGCAAGACAGCCTATGGAGATGTAGTGGGAAACCACTTGGTTTCGAAAGGGAAAGACAGCTGCTTGACGTTTCTGTGCATCATGGATTATGCTTGCCTGCGTTGTCAAGTGGAAACCAATTCTATTTCTTCAGCAAGTATAAGAAAAAGAGAGTGACAGAAAGTGGGTATTGGAAGGAAATAGGTGCGACTGAGTCAGTAGTCTCTGCTGCAGGCAACAAAGTTGGGATCAAGAAATATTTAGTATTCAACAATGGAGAAGAAGCTCCTCATGGTTCTGAAACCAGCTGGGTTATGCAAGAGTATCATCTTCCCTCTTCTGGGTTTAACAATACTCGAGGAATCCTAAAACCTGATAAAAGTCAATGGGTGCTGTGCCGTGTCTATGAAAAGAAGAGAGATTCTGAAGATGATGATGAAGGTGGAAGTACGGAGCTTTCATGGATGGATCAAATGTATATGTCAACGTTGGATGATGATGAAGATGATGATGGAGAAATTAGCTTTCCCTAA 1083 0.4257 MLQLDPPTVFALIRPPGHNVVPQWPMGFCVFGNVVIAARYAQHVHGLKRVFIIDFYVPYGNGTNDAFYDDPDIFFLSTHQAGSYPGTGDTTMRTVFDEVIVPPAQRFKPDIVLVSAGYDAHVLDPLANLREDTISNLFHIQWQTHSGLFLVIGVWIGSRPYIPCDVPSENQILLVINSLERNLAVGSLISVQDSLWRCSGKPLGFERERQLLDVSVHHGLCLPALSSGNQFYFFSKYKKKRVTESGYWKEIGATESVVSAAGNKVGIKKYLVFNNGEEAPHGSETSWVMQEYHLPSSGFNNTRGILKPDKSQWVLCRVYEKKRDSEDDDEGGSTELSWMDQMYMSTLDDDEDDDGEISFP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1526 360 Gene3D Histone deacetylase domain 2 146 IPR037138 -
Lele21g1526 360 Pfam Histone deacetylase domain 9 90 IPR023801 -
Lele21g1526 360 Gene3D NAC domain 198 326 IPR036093 GO:0003677|GO:0006355
Lele21g1526 360 SUPERFAMILY NAC domain 213 321 IPR036093 GO:0003677|GO:0006355
Lele21g1526 360 MobiDBLite consensus disorder prediction 321 360 - -
Lele21g1526 360 PRINTS Histone deacetylase superfamily signature 49 64 IPR000286 -
Lele21g1526 360 PRINTS Histone deacetylase superfamily signature 109 119 IPR000286 -
Lele21g1526 360 PRINTS Histone deacetylase superfamily signature 15 38 IPR000286 -
Lele21g1526 360 PANTHER HISTONE DEACETYLASE 9-RELATED 10 88 IPR017320 GO:0000118|GO:0004407|GO:0006325|GO:0016575
Lele21g1526 360 ProSiteProfiles NAC domain profile. 175 321 IPR003441 GO:0003677|GO:0006355
Lele21g1526 360 SUPERFAMILY Arginase/deacetylase 8 130 IPR023696 -
Lele21g1526 360 Pfam No apical meristem (NAM) protein 222 294 IPR003441 GO:0003677|GO:0006355
Lele21g1526 360 MobiDBLite consensus disorder prediction 345 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1526 Lele-ChrLele21 23485092 23490379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1526 224 326 NAC Transcription Factor Family AT3G15500 43.243 5.32e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele21g1526 NAM 8.7e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1526 21 23485092 23490379 Lele23g0486 23 3559785 3570782 hybridization
Lele21g1526 21 23485092 23490379 Lele24g1475 24 20595496 20603588 hybridization