Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1503 ATGAACTTTCTTTGTTTTTCTGGTCAAAACCTCAGACCTGAGACTTATGCTAGGCTGGGTCAGCCCAGTCCGGCCCTTGCACAGACCTGGGAAGTGGTGGCGGTGTCATCTCTTCTAGGACAGACCTCTTCCATTATAACTGTTGGACCTTGCAACAACGAATTCTGCAAAATGTTTGGTGTGCGTGCTTCTACGGGGATTGTTTCTGACGTTGTTTACCAGCTTCGTCAAACTTTATCACTTCATGGTGTACGAGCACAATATATAAACATTGGAGGTGGTGTTGGAGGGGAGATCCCTGACAACAAGCGCCTTCAGTATGCCCTGCAGCACATACATGGAATTGGCCGTTCCAAAGCTCACCATATTGTCTGTGAGCTTGGGGTTGAGAACAAATATGTCAAGGACCTAAGTAAGAGAGAATTATATTCCCTTCGAGAACTACTTTCCAAGTACTTGCTCGGAAATGACTTGAAAAGATGTGTTGAGAAAGATATAGAAAGGTTGGTGAGTATTCAGTGTTACAGGGGTTTCAGACATGTGGATGGGTTACCCTGCAGAGGACAACGCACACATACAAATGCTCGTACCAGGAAGAGCAGGCCAGGTTTTGCTGCATCAAGATCTGCTCCCTAG 636 0.4607 MNFLCFSGQNLRPETYARLGQPSPALAQTWEVVAVSSLLGQTSSIITVGPCNNEFCKMFGVRASTGIVSDVVYQLRQTLSLHGVRAQYINIGGGVGGEIPDNKRLQYALQHIHGIGRSKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYLLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFAASRSAP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1503 211 Gene3D 30s ribosomal protein s13, domain 2 160 199 IPR027437 -
Lele21g1503 211 FunFam 30S ribosomal protein S13 95 160 - -
Lele21g1503 211 MobiDBLite consensus disorder prediction 187 211 - -
Lele21g1503 211 FunFam Ribosomal protein S13 160 199 - -
Lele21g1503 211 ProSiteProfiles Ribosomal protein S13 family profile. 95 200 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele21g1503 211 ProSitePatterns Ribosomal protein S13 signature. 176 189 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele21g1503 211 Pfam Ribosomal protein S13/S18 96 197 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele21g1503 211 Hamap 30S ribosomal protein S13 [rpsM]. 88 207 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lele21g1503 211 Gene3D - 95 159 - -
Lele21g1503 211 SUPERFAMILY S13-like H2TH domain 96 200 IPR010979 GO:0003676
Lele21g1503 211 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 61 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1503 Lele-ChrLele21 23314901 23317230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1503 103 200 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.328 9.15e-07 45.4