Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1499 ATGGCTCCGGCCAACTCCTCGGCGGCGGCTCAGAGGCTCATCGGCTTCAGCCGTCGTACACAAGCCCCGCGCCACTCGTCGCCGCCGGCCTCACCTCCTGTCAAGAAGTATAAGTCATTGTCCGAGATAATGGCCAAGGCACGATATGCTGTTGTTGAGAGGGGTGATTACAGCGACGTGTTGTGTGACCAATGTGGCTCTGGTGAACGCCCGGACGAGCTGCTTCTGTGTGATAAATGCGACAAAGGTTTCCATATGAAATGCGTGAGGCCCATTGTTGTTAGAGTTCCTATTGGATCATGGCTCTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTAGGGATTTTGTTGTTTTGAAGCTGTGGGGAAAGAAAGAGAGTGGAAAGAGGGAGAGAGGGCAAGAGAGAAGGGGGGATGAAGGGGAGAAAAGAACTGAAGAAAATGGTATCAAGACAAATGAAGATGCCAAGAGGCGTAAAAGGCGTACATCATTGATATTGCACAAGAAACGAAGAAGACTATTGCCATTTAATCCTACAGAAAATCCTTCCCGGAGACTGAAACAGATGGGTTCTCTTGCTACTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTGTACTAATCATGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGGGAATGCCCTCCCCTTATGGTTGTATATGATTCATGTGAAGGGTATACAGTAGAGGCTGATGGCCCAATAAAGGATATGACATTCATTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAACATGATGATTGCGACAGCCTGATGACCCTGCTGCTAGCAACTGATCCTACTAAAAGTCTTGTAATCTGCCCTGATAAACGCGGAAACATTGCTCGCTTTATAAGTGGCATCAACAATCATACACTGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTCCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1167 0.4584 MAPANSSAAAQRLIGFSRRTQAPRHSSPPASPPVKKYKSLSEIMAKARYAVVERGDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSRDFVVLKLWGKKESGKRERGQERRGDEGEKRTEENGIKTNEDAKRRKRRTSLILHKKRRRLLPFNPTENPSRRLKQMGSLATALTALHMEFSDDLTYSPEMAPRCTNHADFENGGMQVLSREDIETLEHCRAMCRRGECPPLMVVYDSCEGYTVEADGPIKDMTFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPTKSLVICPDKRGNIARFISGINNHTLEGRKKQNCKCVRYNVNGECRVFLVATRDIPKGERLYYDYNGYEHEYPTHHFV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1499 388 Pfam SET domain 270 376 IPR001214 GO:0005515
Lele21g1499 388 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Lele21g1499 388 Pfam PHD-finger 62 107 IPR019787 -
Lele21g1499 388 MobiDBLite consensus disorder prediction 15 35 - -
Lele21g1499 388 CDD PHD_RSF1 61 106 - -
Lele21g1499 388 SMART PHD_3 61 107 IPR001965 -
Lele21g1499 388 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Lele21g1499 388 CDD SET_ATXR5_6-like 251 388 - -
Lele21g1499 388 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 126 386 - -
Lele21g1499 388 MobiDBLite consensus disorder prediction 128 162 - -
Lele21g1499 388 ProSiteProfiles SET domain profile. 254 376 IPR001214 GO:0005515
Lele21g1499 388 SUPERFAMILY SET domain 218 376 IPR046341 -
Lele21g1499 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 117 IPR013083 -
Lele21g1499 388 FunFam Histone-lysine N-methyltransferase ATXR5 160 388 - -
Lele21g1499 388 Gene3D SET domain 160 388 IPR046341 -
Lele21g1499 388 SUPERFAMILY FYVE/PHD zinc finger 27 107 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1499 Lele-ChrLele21 23282481 23286482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1499 54 139 C2H2 Transcription Factor Family AT3G01460 31.395 2.36e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele21g1499 SET 7.4e-07 No_clan