Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1494 ATGATGAGGGACGATCTATACATCACGATTCCGAGCTTCTTCCGGTGTCCTATATCCCTTGATATCATGAAATCTCCGGTGAGTCTCTGCACCGGCGTTACCTACGACCGTTCCAGCATCCAACGGTGGCTTGACAACGGCAACAACACCTGCCCGGCCACCATGCAGGTTTTGCAAACCAAAGAATTTGTTCCTAACCGTACTCTACAGAGGCTTATCCAGATCTGGTCTGACTCGGTTCGAAACCGAGTCGAATCGGCCGATTCTCCGGCCACCAGAACAGTACCCTCACAGGATCAGGTCGTGGACTCTATGAAATACCTGGACGGCCACGGAGAGAACTGTCTCGATTCGTTAACAAGAATTGTATATTTCGCCGAAGAATCTGAAGAGAATAGGGAGTTCCTCGCGAAGTTAGACGGATTTGTGTCTTTACTCATTGATTTACTCGACAATGTCAATGGCGCCGTTGAAATGCTCGAGAGAGTCGTTAATGTTTTGGATACGGTTCTAAATAAAATCGAAGATCATGAGCAGTTGAAGAAATTGATGTTGAAGAACCACGTTAATTGCCTAGCTTCTCTGCTGATCGTTCTGCAACAAGGCAGCGCCAGCTCGAAAATCGGATCTGCTAGGATTCTGAAGTTCATCGCGGTGGATACCGAGTCCAAAACCATGATCGCCGAAAAGGAAGGTTTAATGTCCGAATTGCTCAAATCAGTCTCTCCAGACAAAGACCCGGCGCTAATCGAGAACGCCTTGTCGTGTTTGATTGCAATCTCCACGCCGAAACGGAACAAGTTGAAATTGGTCCATCTCGGAGCTATCAAGACACTTTCGCGATTACTTTCCGGCTCAAATTCGAGCACTTCCGTAACGGAAAAGGTCCTGAAGCTTCTCGAAACTGTGTCGTCGACGAAAGAAGGTAGGTTGGAGATTTGCGATGACCCGGCGTGTTTACCGGCGGTATTGCAGAAAGTGATGAAGGTATCGATCATCGCGACGGAGCACGCGGTGATGACACTGTGGACTGTGTGTTATCTGTTTCGCGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGTTTCACCAAATTTCTGCTTCTGATGCAGAGCAATTGTTCGCCGGCGGTTCGTCAAATGTCGGCCGATTTGCTAAAGATTTTTCGGGTTAACTCGAAATCATGCCTTTCTTGCTACGATACGAAGACGACCCATATAATGCCCTTCTGA 1236 0.4822 MMRDDLYITIPSFFRCPISLDIMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSVRNRVESADSPATRTVPSQDQVVDSMKYLDGHGENCLDSLTRIVYFAEESEENREFLAKLDGFVSLLIDLLDNVNGAVEMLERVVNVLDTVLNKIEDHEQLKKLMLKNHVNCLASLLIVLQQGSASSKIGSARILKFIAVDTESKTMIAEKEGLMSELLKSVSPDKDPALIENALSCLIAISTPKRNKLKLVHLGAIKTLSRLLSGSNSSTSVTEKVLKLLETVSSTKEGRLEICDDPACLPAVLQKVMKVSIIATEHAVMTLWTVCYLFRDQKAQEVVAMANGFTKFLLLMQSNCSPAVRQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1494 411 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lele21g1494 411 SUPERFAMILY ARM repeat 68 393 IPR016024 -
Lele21g1494 411 SUPERFAMILY RING/U-box 4 79 - -
Lele21g1494 411 PANTHER WDSAM1 PROTEIN 9 399 IPR045185 GO:0061630
Lele21g1494 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 75 IPR013083 -
Lele21g1494 411 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Lele21g1494 411 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 274 313 IPR000225 GO:0005515
Lele21g1494 411 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lele21g1494 411 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lele21g1494 411 Gene3D - 76 399 IPR011989 -
Lele21g1494 411 CDD RING-Ubox_PUB 14 56 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1494 Lele-ChrLele21 23246299 23247534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1494 1 411 U-box Gene Family AT5G64660 55.896 7.93e-157 447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1494 21 23246299 23247534 Lele23g0519 23 3811872 3813107 hybridization
Lele21g1494 21 23246299 23247534 Lele24g1435 24 20298903 20300072 hybridization