Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1486 ATGCTGTGGATGTTAGCATCTCTATATACTTGTTGGCATCTACATGTCAGTGAATTTTGGTTTCATGGTTCAACCGATGTTTTAATATATGGTCCACATCTGCAGGCTGGATTTGCTGGTGATGATGCTCCCAGAGCTGTGTTTCCCAGTATTGTTGGCCGACCCCGGCATACTGGTGTTATGGTTGGGATGGGTCAGAAAGATGCATATGTAGGTGATGAAGCTCAGTCAAAAAGAGGTATTCTTACTTTGAAGTACCCCATTGAGCATGGTATAGTCAGTAACTGGGATGACATGGAGAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCTCCTGAGGAACACCCAGTGCTTCTCACTGAGGCTCCTCTCAACCCTAAAGCCAACAGAGAGAAGATGACTCAGATCATGTTTGAGACCTTCAATGTCCCTGCCATGTATGTAGCCATCCAGGCTGTTCTCTCTCTATATGCCAGTGGTCGTACGACTGGTATTGTTTTGGACTCCGGTGACGGTGTGAGCCACACTGTCCCAATTTATGAGGGTTATGCACTTCCTCATGCTATTCTCCGTTTGGATCTCGCTGGCCGTGATCTTACTGATTCATTGATGAAGATCCTCACTGAGAGAGGGTATATGTTTACTACCTCTGCCGAGCGAGAAATTGTCCGTGACATGAAGGAGAAACTTGCATATGTTGCTTTAGACTATGAGCAAGAACTTGAGACTGCAAAGACCAGCTCTTCAGTGGAGAAGAACTATGAGCTTCCTGATGGACAAGTTATTACAATTGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCATCTATGATCGGAATGGAAGCTGCTGGAATCCACGAAACCACTTACAATTCTATCATGAAGTGTGATGTGGATATCAGAAAGGATCTTTATGGCAACATTGTTCTTAGTGGTGGATCAACCATGTTTCCGGGTATCGCTGACCGAATGAGCAAGGAAATCACTGCACTTGCTCCAAGCAGCATGAAGATTAAGGTGGTGGCTCCACCAGAGAGAAAGTACAGTGTCTGGATCGGAGGTTCAATTCTTGCATCCCTCAGCACCTTCCAGCAGTCGTTTTTTCGGTGTCGGTCATTGGAGGGTAGTCTGAGCTTTGATTGTATGGTACTCTGGTTCATAGTGGTGGGCAGAAAGTTGTTTTAA 1203 0.4547 MLWMLASLYTCWHLHVSEFWFHGSTDVLIYGPHLQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKTSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQSFFRCRSLEGSLSFDCMVLWFIVVGRKLF 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1486 400 ProSitePatterns Actins and actin-related proteins signature. 121 133 IPR020902 -
Lele21g1486 400 SMART actin_3 25 388 IPR004000 -
Lele21g1486 400 CDD NBD_sugar-kinase_HSP70_actin 91 198 - -
Lele21g1486 400 Gene3D Actin; Chain A, domain 4 197 288 - -
Lele21g1486 400 Pfam Actin 33 372 IPR004000 -
Lele21g1486 400 FunFam Actin, muscle 197 288 - -
Lele21g1486 400 FunFam Major actin 275 355 - -
Lele21g1486 400 SUPERFAMILY Actin-like ATPase domain 164 373 IPR043129 -
Lele21g1486 400 Gene3D - 155 355 - -
Lele21g1486 400 Gene3D - 34 373 - -
Lele21g1486 400 PRINTS Actin signature 253 269 IPR004000 -
Lele21g1486 400 PRINTS Actin signature 78 100 IPR004000 -
Lele21g1486 400 PRINTS Actin signature 157 176 IPR004000 -
Lele21g1486 400 PRINTS Actin signature 43 52 IPR004000 -
Lele21g1486 400 PRINTS Actin signature 66 77 IPR004000 -
Lele21g1486 400 PRINTS Actin signature 132 145 IPR004000 -
Lele21g1486 400 PANTHER ACTIN 35 369 IPR004000 -
Lele21g1486 400 SUPERFAMILY Actin-like ATPase domain 34 170 IPR043129 -
Lele21g1486 400 FunFam Actin, alpha skeletal muscle 27 195 - -
Lele21g1486 400 ProSitePatterns Actins signature 1. 70 80 IPR004001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1486 Lele-ChrLele21 23169588 23171064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1486 34 371 Cytoskeleton Gene Families AT5G09810 97.929 0.0 686