LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1479	ATGCTACAGAATTCGAGTGTACCTGAAAGCTCCATTCACCACCGGAGTCACACAGAAGAGGGTGGTGGTAAGCCTGTTTCTGATGGACTCGAAAACGAACAGGTAATAGTCTCAGCCGAAGATGTTGACCGGAATCTCACCGGTGGCCGGTGGCCTCTAGAAGAGACTAAGGCTTTGCTCAAGATAAGGAGATTAGGGGAGCTAGGATATAATAGGAGTGCTAAGAAATGCCAGGAGAAGTTTGAAAATGTGTACAAGTACTACAGAAGAACCAAGGAAGGTCGTTATGGCCGGTCCAACGCCAAGACTTACCGATTCTTTGAGCTGTTAGAACCTCTTATGAACTCTCCTTACCCCGAAACGAATGGAGAACAAGCGAGAAACACAGCAACAACCACAACCCCAATGGATTTGTCCAATGTTATTCAAGGTGCAATTCAACATCCTTACCACGAAAAGAATGAAGAACAAGTGGAAAACATAGCAACAACTACAACCCCAATGGATTTGTCCAATGTTATTCAAGATTCAATTCCACATTCCATTCGATTCTCTGGTGACCCCTCTGGTTCAGCTACTCCCTCTTCGAGCGAAGAATCAGATGAAGATATTCGAAAGAAGAAAAGGAAACTGACGCAGTATTTTGAGACCTTGATGAACAAAGTACTAGAGAAGCAAGCGAAGCTACAGAAGAGATTTATGGAGAGTTTACTCAAATGTGAACAAGATAGAATGGTAAGAGAGGAAGCATGGAAGATGCAAGAATTGACTAGGATTAAGAGGGAAAGAGATATTTTAGCTCAAGAAAGGTCAATTGCCGCGGCAAAAGATGCTGCACTGCTTGCCCTTCTGAGAAAGTTCGCAGGACAAACAGGGACCATAGAATTACCTGAGGACCTACTTCCAAATGATTTAGATAAGGACGAGCAAGAAAATGATAATGCAGGCAGTAGTGTTATTGAAAAGCAAGAACGTAGAAATGGTGGGAATTTCACACTGACGAGTCCATCTTCCTCTAGATGGCCCAAAGATGAAGTGGAAGCTTTGATTAGAGTGAGGATAAACTTTGATGGGGAGAATGAAGGAAATGGGCTTAAAGGGTCTATTCCTATATGGGAGGAGATATCTAATGAAATGAACAAACTTGGGTACGATCGGAGTGCCAGGAGATGCAAAGAGAAATGGGAGAATATGAACAAATACTTCAAGAGGATGAAGAATAAAAACCAGAAAAAGCCTCAGAGTTCTAAAACATGTCCTTATTTTCACCAGCTGGATGCTCTGTACAATAGTGAAAAGCCTAATGATGAGAAGGTGGAGGATTCAGCCAGTTCTGATAAGGATCAACTGAAGCCTGAGGAGCTACTAATGCATCTTATGGAGGGTCAGTCTCAGTCATCATCAGAGGATGGTGACAGAGAAGAAGGATCAGAATAA	1437	0.4266	MLQNSSVPESSIHHRSHTEEGGGKPVSDGLENEQVIVSAEDVDRNLTGGRWPLEETKALLKIRRLGELGYNRSAKKCQEKFENVYKYYRRTKEGRYGRSNAKTYRFFELLEPLMNSPYPETNGEQARNTATTTTPMDLSNVIQGAIQHPYHEKNEEQVENIATTTTPMDLSNVIQDSIPHSIRFSGDPSGSATPSSSEESDEDIRKKKRKLTQYFETLMNKVLEKQAKLQKRFMESLLKCEQDRMVREEAWKMQELTRIKRERDILAQERSIAAAKDAALLALLRKFAGQTGTIELPEDLLPNDLDKDEQENDNAGSSVIEKQERRNGGNFTLTSPSSSRWPKDEVEALIRVRINFDGENEGNGLKGSIPIWEEISNEMNKLGYDRSARRCKEKWENMNKYFKRMKNKNQKKPQSSKTCPYFHQLDALYNSEKPNDEKVEDSASSDKDQLKPEELLMHLMEGQSQSSSEDGDREEGSE	478

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	298	339	-	-
	Lele21g1479	478	Pfam	Myb/SANT-like DNA-binding domain	339	428	IPR044822	-
	Lele21g1479	478	Pfam	Myb/SANT-like DNA-binding domain	65	111	IPR044822	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	321	339	-	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	300	320	-	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	12	26	-	-
	Lele21g1479	478	PANTHER	FI21293P1	13	469	-	-
	Lele21g1479	478	CDD	GT1	339	406	-	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	180	197	-	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	1	29	-	-
	Lele21g1479	478	SMART	sant	47	87	IPR001005	-
	Lele21g1479	478	SMART	sant	337	401	IPR001005	-
	Lele21g1479	478	Gene3D	-	341	404	-	-
	Lele21g1479	478	Gene3D	-	62	90	-	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	430	455	-	-
	Lele21g1479	478	FunFam	Trihelix transcription factor GT-2	341	404	-	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	180	205	-	-
	Lele21g1479	478	ProSiteProfiles	Myb-like domain profile.	339	399	IPR001005	-
	Lele21g1479	478	MobiDBLite	consensus disorder prediction	405	478	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1479	Lele-ChrLele21	23139296	23141141	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1479	48	430	Trihelix Transcription Factor Family	AT1G76890	41.280	1.53e-94	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Lele21g1479		Myb_DNA-bind_4	4e-21	CL0123