Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1475 ATGATCAAACTCCTCTTGCCCAAAAATGTCACTATTATATCATCTTTTTCTTCCTCCTCGCCATTAGTTCGTCCTCTTCTCCAAATTTGTCACGTCTCAGCCTCGTCGTCATATAATCATTCATTCTTGAGAACCCATGATGAAGAAACACGAAATGATCGAAATGTACCAATTTCAGTGTGGTGGGAGTTCGATAGTTGTTATTTACCTGCTGATGTTAATGGTTATAGAATCACCCACTGCATAACAGAAGCTCTTAGGGCCAAAGGGATAAAGGGGCCGCTTCAAATCAAGGCTTTTGGTGATGTCTTGCGACTTTCAACTGCCAATCAGGAAGCTCTCTCTTCCACTGGGATAAATCTGGTCCACATTCCCAATGGTGGAAAAATTCCTGCCCATGGATCTCTTCTTGTTGAACTTATGCATTGGGTTACCAAAAATCCTCCACCAGCACATCTGTTTTTAATTACTGATAATAGGGTTTTTGTTGATATGTTGCACCGTTTAAGATTGGATAACTACAACATCTTGCTCGCAACACCAACAAGGGCTCCTAATGTTCTCTGCAATGCAGCAACTATAATGTGGCATTGGAATTCATTACTTAGAGGAGAAAATCTTGATGGAAAACACTTTAATCATCCTCCTGATGGTTTGGATGGCTCTTGGTATGGGCACCATAAGGTGCCTCTTGAAGACCCTTTGTTGAACGGGAAACAGTCACAGATGGAGGAGATATCTGCGCCTATCTTAGATTTGGAATTGCGTACAGTTCCAAAGGCAGTTGTGAGGCAAGTTCAAGAAATATTGAACTCATATCCAACAGGTATCTCTGTATCAGACCTTCGAGCAGAGATAGCAAAAGCTGGTATTTTCTTGGATAAAGACTACTATGGTCATAAAAAGTTTTCCCGCTTTCTTTCGTCAATAGCAAATGTACAACTTGTTCTTGGACCTGATAAATTACTTTTTGTTCATCCCATTCCCCAAAAATGTCCTGGACCCTTTGATAAGGGTTCTGTATCATCAACAGCATCTGTTTATGGTGAGGAGTTGAACCAGGTGGCAACCTCAAAGTTAAGTGGTGAGGTCAAAAAGGTGGTTGGGGATGCAGATGTGAACCCATTAAGAGTATCTGTTGATGTTGAGGAGTTGAACCAGCCAGCTACTTCAAAGTTAAGTGGTGAGGTGGGAAAGGTGGTTGGGGATGCAGAAGTGAAACCATCAATGGCTTCATCTCAGGTCCCAGAAAATGTCCAACAGGTTGGGGATGTGGTTAATGCACATGCAACTGAGAGTCAATTGCCTCTGAAGGAGAATGAAATTCTTAGCTCTAGTGATGTAAGTCTGAGTATCACTGAGAAAAATACAACTTCAAAGAACTACTCTACCGAACAAAGCAACACAGTTTCAGAAAAGAATGGCTCTTCAAATGATATTTCTGGAAAGTTACAAGATGAGGACAAATATGACAAATCCACAAGAAAGGAAGCTAATGCAGTTTGTCACAATCCTCATTCTTTACCAGTTGATGAATCTGTGATTGACAAAAGCATTGGTGAAAGCACTGAAACTTACAGCAAAAATTTTGGCAAACGTCTAAATTTTTTTGCTTGGATTAGCAGCTGGTGGCCATTCAGGAAAAATGGTGGAAACTCAAATAATTTGGCTGATCAACCGAATGAGATGCTTAGTAATACTGAAGAGCCCAAGCTTTCAAACCTGAGCCAGGCAACCCGTCATTCTGGAGAGTCTGAGTTGTCAGATCTGAAACAAACAGCTTGTCATTCTGAAGAGTCTGAGTTCACAGAACATAAACAAACAGTTAGTCACTCTCAGGAGCCCAAGTTATCCAAACCAAGACATACAGTGAATAATTTTGTAGAGCCTGAGTTATTTTCTAGTAGTTCCTTTTGGAGTGACATGGAATTATTCATTTTTAATGCCAAAGGATTGACTCTAATCTCCCGTTCTAAAAGCAGGAAGGATATGATGCAGAAATTTCAGAGGTATGGACCTCAGGTTCTTAGTTCTCTTAGTGAAAATGATCTCCTTCAACTGGTGGATATATTGATGTCTGAGAAAAAATGGTTGGAGGAAAGGCCTTCTCTGACTTTTCCTTTCCGGGTCACTCCGCAGGCTGGGAAAAACTCCGTGGGGCTGTCACCTGGTGCAACTGGCTTGAGATCTCTCTTTCTAAGCAAAGAAGCGCAGAGCGTCTTGCAAAAATCATCAGAAGGTGATATTGATAAAAGATATCAGAGTATGCCTCACGCTGGAGTTTCTTCACCTCCCATTAAAAATAAGCACACTGAAAAGTCGAGAACTGACACAATAGCAGATATTCGGAAACTTGTGGATGACATATTGAAGGAACACTCCGATGGGTATAATATGGGTGGGATACCAAAACTTTTTCTGGAGAGGTATGGCTATCCTCTTGATGTTCAGAAGCTTGGTTATCAAAAGTTGGCAACCTTATTACAGATTCTTCCTGGACTGAAAGTGGAGTCTTCTTACATCTTTCCCGCTGATCATCCCGGTTTTGCGTCTGACATGGAAATATCAACTCTCAATACTTTAGTGAACAATTCAAGTGGTGCAGGGAAAAATTCGGATAGAGAGTCATCTGATTCATGCCCTAAAGATGATGGAAAAGACACTCAGTGGGAGGAATTAGGACCTTTGTCAGTCAGCAATTCGAACCAGAGTGGCCTGGAAACAAAATCAAGGCAAAAGGCTTTAAAGATGGAGACCTCACTACATTCTGATTATGAACCTTCACTTTCTGACGATGATTCTTCTGAATCTGAAGGAGATAACTCTTGTTTAACTCAATCGGAAGATGAAGGACGGTCAAAACATAATGTGGAAGACAGTTCTCTTTTGCAAACTCTGGAGTCATTTTACAGAAGCCGAGAAGAGGATAGTGTGAAGTCAGAAAATACTGACACCAAAAGCGATGGTCTGGCTGGTGTTTTACATCCACCCCGGCATTCCACTCCTGGAGTGGCAGTTCGCAAAGAGAAGCAAAGACCTCAAAAGAGCTATTCATTTGTTGCCGATCCGGACTCACGAAAGAAGGACGAGCTAATCGATGGAATATTACAAAATTTGAGGAAATCAGATGAGTTGAAGATGCGAAATTGA 3150 0.413 MIKLLLPKNVTIISSFSSSSPLVRPLLQICHVSASSSYNHSFLRTHDEETRNDRNVPISVWWEFDSCYLPADVNGYRITHCITEALRAKGIKGPLQIKAFGDVLRLSTANQEALSSTGINLVHIPNGGKIPAHGSLLVELMHWVTKNPPPAHLFLITDNRVFVDMLHRLRLDNYNILLATPTRAPNVLCNAATIMWHWNSLLRGENLDGKHFNHPPDGLDGSWYGHHKVPLEDPLLNGKQSQMEEISAPILDLELRTVPKAVVRQVQEILNSYPTGISVSDLRAEIAKAGIFLDKDYYGHKKFSRFLSSIANVQLVLGPDKLLFVHPIPQKCPGPFDKGSVSSTASVYGEELNQVATSKLSGEVKKVVGDADVNPLRVSVDVEELNQPATSKLSGEVGKVVGDAEVKPSMASSQVPENVQQVGDVVNAHATESQLPLKENEILSSSDVSLSITEKNTTSKNYSTEQSNTVSEKNGSSNDISGKLQDEDKYDKSTRKEANAVCHNPHSLPVDESVIDKSIGESTETYSKNFGKRLNFFAWISSWWPFRKNGGNSNNLADQPNEMLSNTEEPKLSNLSQATRHSGESELSDLKQTACHSEESEFTEHKQTVSHSQEPKLSKPRHTVNNFVEPELFSSSSFWSDMELFIFNAKGLTLISRSKSRKDMMQKFQRYGPQVLSSLSENDLLQLVDILMSEKKWLEERPSLTFPFRVTPQAGKNSVGLSPGATGLRSLFLSKEAQSVLQKSSEGDIDKRYQSMPHAGVSSPPIKNKHTEKSRTDTIADIRKLVDDILKEHSDGYNMGGIPKLFLERYGYPLDVQKLGYQKLATLLQILPGLKVESSYIFPADHPGFASDMEISTLNTLVNNSSGAGKNSDRESSDSCPKDDGKDTQWEELGPLSVSNSNQSGLETKSRQKALKMETSLHSDYEPSLSDDDSSESEGDNSCLTQSEDEGRSKHNVEDSSLLQTLESFYRSREEDSVKSENTDTKSDGLAGVLHPPRHSTPGVAVRKEKQRPQKSYSFVADPDSRKKDELIDGILQNLRKSDELKMRN 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1475 1049 Pfam NYN domain 58 192 IPR021139 GO:0004540
Lele21g1475 1049 MobiDBLite consensus disorder prediction 584 618 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 969 983 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 1002 1024 - -
Lele21g1475 1049 PANTHER LIMKAIN B LKAP 47 743 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele21g1475 1049 MobiDBLite consensus disorder prediction 875 890 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 893 910 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 457 505 - -
Lele21g1475 1049 ProSiteProfiles OST-type HTH domain profile. 258 329 IPR025605 -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 911 929 - -
Lele21g1475 1049 ProSiteProfiles OST-type HTH domain profile. 778 852 IPR025605 -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 457 481 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 864 1024 - -
Lele21g1475 1049 CDD LOTUS 779 836 - -
Lele21g1475 1049 Gene3D - 773 840 IPR041966 -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 482 499 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 554 583 - -
Lele21g1475 1049 CDD LOTUS 259 320 - -
Lele21g1475 1049 Pfam OST-HTH/LOTUS domain 782 837 IPR025605 -
Lele21g1475 1049 Pfam OST-HTH/LOTUS domain 260 315 IPR025605 -
Lele21g1475 1049 CDD PIN_limkain_b1_N_like 57 181 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 755 774 - -
Lele21g1475 1049 MobiDBLite consensus disorder prediction 554 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1475 Lele-ChrLele21 23121955 23125700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1475 59 204 C2H2 Transcription Factor Family AT5G61190 40.411 1.37e-28 122