Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1474 ATGGATTTGGACGATTTCCGATCAATATTGGAGACGGCTGGTGTGGATGTATGGATGTTCATTGACACTGCAATCGACGTGGCTTCCATTGAGTACAACAACGAGTTAAAGCGTAGAAGGGATGGAATCGTTCAGCGTCTCTACGAAGTCACCTCAGCTCCGGGATGGTGTCGGAACTGCGAAGCGATTAAGTCTAATGGCCACGAAATAAGCTCTCCAATTGAGAAACAGAGCACTCCTGAACTGAAAAGAGATGCCTCACCTGTAACGCCGCACTCTATCGGTCAAGATGACGACTATTTAGATCCTTATGGAGGCCTTCTCGATGATGAGCAAAAGAAGATTCAAGAGATCAAAGAACAACTTGAGGATCCTGACCAGCCTGAAGATTATGTGGTGGAGTTGCTACAGAATCTAGCGGACATGGATATTACATTCCAAGCATTAAAGGAGACTGATATTGGGAGGCACGTTAATCGGTTGCGCAAGCATCCATCCAATAATGTTCGGAGATTGGTGAAGCTACTTGTCAGGAAATGGAAGGAGATTGTAGATGAATGGGTGAAGGTAAATCAACCAGGCGATGTTGCTTCTGCCGTCATGGCTAATGGAGATTCGCCTATGCAGAAAAACGGCCAAAACGGGCACAACCAGATTCCTGATTTTGCATACTCGCCTAATCCGCAATATGGGAGTTCTGGGTCAGAGAGAAACTATTCAGAAACTCAACCAAAGCCAAAGACAGTTTCTCAAAGAGCGCCACCAAAACCGGCAACCCCAGTGCCTATTCCTACTTCTGCTCCTCAAAACAGAAAGAGAGAACAGAGAGATAGCAATTTTGAAGCAGATAAACTTGCTTCGGCAAGGAGGCGGCTTCAGGAGAACTACAAAGAGGCTGAAACTGCCAAAAGACAAAGAACGATCCAAGTGATGGATATCCATGAGATACCTAGACCCAAGAAAGCTTTCTTTGCAAAGAACAAAGGTGGCGCCGCTTCTCAGGGTAGACACTGGTAA 1017 0.4592 MDLDDFRSILETAGVDVWMFIDTAIDVASIEYNNELKRRRDGIVQRLYEVTSAPGWCRNCEAIKSNGHEISSPIEKQSTPELKRDASPVTPHSIGQDDDYLDPYGGLLDDEQKKIQEIKEQLEDPDQPEDYVVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNNVRRLVKLLVRKWKEIVDEWVKVNQPGDVASAVMANGDSPMQKNGQNGHNQIPDFAYSPNPQYGSSGSERNYSETQPKPKTVSQRAPPKPATPVPIPTSAPQNRKREQRDSNFEADKLASARRRLQENYKEAETAKRQRTIQVMDIHEIPRPKKAFFAKNKGGAASQGRHW 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1474 338 CDD TFIIS_I 112 185 - -
Lele21g1474 338 MobiDBLite consensus disorder prediction 204 249 - -
Lele21g1474 338 Coils Coil 282 309 - -
Lele21g1474 338 Pfam TFIIS helical bundle-like domain 135 184 IPR017923 -
Lele21g1474 338 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 108 195 IPR035441 -
Lele21g1474 338 ProSiteProfiles TFIIS N-terminal domain profile. 110 187 IPR017923 -
Lele21g1474 338 MobiDBLite consensus disorder prediction 270 288 - -
Lele21g1474 338 MobiDBLite consensus disorder prediction 68 98 - -
Lele21g1474 338 SMART TFS2_5 115 186 IPR003617 GO:0005634
Lele21g1474 338 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 338 IPR044790 -
Lele21g1474 338 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 113 192 IPR035441 -
Lele21g1474 338 MobiDBLite consensus disorder prediction 198 288 - -
Lele21g1474 338 MobiDBLite consensus disorder prediction 250 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1474 Lele-ChrLele21 23117785 23119722 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele21g1474 Med26 1.8e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1474 21 23117785 23119722 Lele23g0538 23 3940120 3942080 hybridization
Lele21g1474 21 23117785 23119722 Lele24g1415 24 20159534 20162336 hybridization