Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele21g1467 | ATGGACTTTGACGAGTATGATTACTTGGAAAAGACAGTGGAGGAGCAAGGAGATCAGGATTTGACGAAGAGCAAGGAGAAAAACGATAAGAGTGAGAGGGCTTACCGGAAGCGTGACGTCGACGATGATGTTGACGGTGAAGATAAGAAGAGCAAGAGGTCCCGGGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGAGAGAGGACGGTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAGGGACGGTGATAGGGAGCGGGAGAGGAGGAGTAGTAAGGAGAGAGATAGGGAGAAGGACAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAAGGAGAAGGAGAGGGAGAGGGAGAGAAGAGATAGAGACAGGGAGAGGGAAAAAGAACGGGAGAGAAGGGAGAGGGAGAGGGAAAGGGAGAGAGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGAAAGAGAACGGGAATTGGAGACTAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTGAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGAAAGGTGAGGGATGTCCGTTTGATCATGGATAGGAATTCAAGGCGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGTGATGTCAGTGCCAATGGGAATTGCCCTTTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACTACCAGTGTAGGTGCAGGGGTAGCAGGGCCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTACCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCTAATCTCGAACATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAGATCGCTGGTAGGACTATCAAGGTTTCATCAGTAACGGATCATGTTGGAGGCCAAGATACAACTGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCAATGCTTATGGCAAAGTTGGATCGCTCTGGTATTGCTACAAGCATTGCAGGGTCTATGGGTGGTGTGCCTCTTCCGAATGGCTCAGCCCCTGCCCAGCAGCAGGCTGTTAATTTGCCTGTTGGGGGTCCAGGTATAGTACCTGCATCAACTCTCCCAACAGCCATTATGCCTACCCCAGGAGTAGCAGAGCCAGTTGGAACCCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAATCACTGAGACGGAACCAGATTTTGATGAGGATATTAAGGAGGATGTAGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAAAAATAGTGCAGGTTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCTAGTGCTGCTCAACAGGCAATGCACCTGAGATGGTTTGCCCGCAGGTTGATTTCAGCGATCTTCATGCAACCTCAGGTATATGAAGAAAAGTTTAAAGGAGAAGCCTGA | 1725 | 0.4759 | MDFDEYDYLEKTVEEQGDQDLTKSKEKNDKSERAYRKRDVDDDVDGEDKKSKRSRGDDENGSRKDREDRERGRSSREKERHRSSRDRERDGDRERERRSSKERDREKDRDKERERERRDKEKERERERRDRDREREKERERREREREREREREERERSRRSRSRSDRDRERERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMGIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSVGAGVAGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFIQFANLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLPNGSAPAQQQAVNLPVGGPGIVPASTLPTAIMPTPGVAEPVGTPSECLLLKNMFDPITETEPDFDEDIKEDVAEECSKFGRVKHIYVDKNSAGFVYLRFETVQAASAAQQAMHLRWFARRLISAIFMQPQVYEEKFKGEA | 574 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele21g1467 | 574 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 87 | 570 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Lele21g1467 | 574 | MobiDBLite | consensus disorder prediction | 1 | 200 | - | - | |
Lele21g1467 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 504 | 555 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 305 | 375 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 208 | 267 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | SUPERFAMILY | RNA-binding domain, RBD | 194 | 285 | IPR035979 | GO:0003676 | |
Lele21g1467 | 574 | CDD | RRM3_RBM39_like | 479 | 561 | - | - | |
Lele21g1467 | 574 | CDD | RRM1_RBM39_like | 202 | 274 | - | - | |
Lele21g1467 | 574 | MobiDBLite | consensus disorder prediction | 10 | 200 | - | - | |
Lele21g1467 | 574 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 396 | 498 | IPR029123 | - | |
Lele21g1467 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 201 | 278 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | Coils | Coil | 117 | 161 | - | - | |
Lele21g1467 | 574 | FunFam | Splicing factor CC1-like | 287 | 392 | - | - | |
Lele21g1467 | 574 | Gene3D | - | 475 | 574 | IPR012677 | - | |
Lele21g1467 | 574 | FunFam | Splicing factor, CC1-like protein | 475 | 574 | - | - | |
Lele21g1467 | 574 | Gene3D | - | 299 | 394 | IPR012677 | - | |
Lele21g1467 | 574 | SUPERFAMILY | RNA-binding domain, RBD | 303 | 563 | IPR035979 | GO:0003676 | |
Lele21g1467 | 574 | Gene3D | - | 132 | 288 | IPR012677 | - | |
Lele21g1467 | 574 | SMART | rrm1_1 | 304 | 377 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | SMART | rrm1_1 | 202 | 274 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | SMART | rrm1_1 | 481 | 558 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 303 | 381 | IPR000504 | GO:0003723 | |
Lele21g1467 | 574 | ProSitePatterns | Rrf2-type HTH domain signature. | 416 | 434 | IPR030489 | - | |
Lele21g1467 | 574 | CDD | RRM2_RBM23_RBM39 | 305 | 377 | - | - | |
Lele21g1467 | 574 | FunFam | Splicing factor CC1-like | 127 | 286 | - | - | |
Lele21g1467 | 574 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 570 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele21g1467 | Lele-ChrLele21 | 23077231 | 23083419 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele21g1467 | 283 | 376 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 34.737 | 2.20e-07 | 52.0 |