Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1467 ATGGACTTTGACGAGTATGATTACTTGGAAAAGACAGTGGAGGAGCAAGGAGATCAGGATTTGACGAAGAGCAAGGAGAAAAACGATAAGAGTGAGAGGGCTTACCGGAAGCGTGACGTCGACGATGATGTTGACGGTGAAGATAAGAAGAGCAAGAGGTCCCGGGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGAGAGAGGACGGTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAGGGACGGTGATAGGGAGCGGGAGAGGAGGAGTAGTAAGGAGAGAGATAGGGAGAAGGACAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAAGGAGAAGGAGAGGGAGAGGGAGAGAAGAGATAGAGACAGGGAGAGGGAAAAAGAACGGGAGAGAAGGGAGAGGGAGAGGGAAAGGGAGAGAGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGAAAGAGAACGGGAATTGGAGACTAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTGAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGAAAGGTGAGGGATGTCCGTTTGATCATGGATAGGAATTCAAGGCGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGTGATGTCAGTGCCAATGGGAATTGCCCTTTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATACTACCAGTGTAGGTGCAGGGGTAGCAGGGCCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTACCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTGCTAATCTCGAACATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAGATCGCTGGTAGGACTATCAAGGTTTCATCAGTAACGGATCATGTTGGAGGCCAAGATACAACTGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCAATGCTTATGGCAAAGTTGGATCGCTCTGGTATTGCTACAAGCATTGCAGGGTCTATGGGTGGTGTGCCTCTTCCGAATGGCTCAGCCCCTGCCCAGCAGCAGGCTGTTAATTTGCCTGTTGGGGGTCCAGGTATAGTACCTGCATCAACTCTCCCAACAGCCATTATGCCTACCCCAGGAGTAGCAGAGCCAGTTGGAACCCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAATCACTGAGACGGAACCAGATTTTGATGAGGATATTAAGGAGGATGTAGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAAAAATAGTGCAGGTTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCTAGTGCTGCTCAACAGGCAATGCACCTGAGATGGTTTGCCCGCAGGTTGATTTCAGCGATCTTCATGCAACCTCAGGTATATGAAGAAAAGTTTAAAGGAGAAGCCTGA 1725 0.4759 MDFDEYDYLEKTVEEQGDQDLTKSKEKNDKSERAYRKRDVDDDVDGEDKKSKRSRGDDENGSRKDREDRERGRSSREKERHRSSRDRERDGDRERERRSSKERDREKDRDKERERERRDKEKERERERRDRDREREKERERREREREREREREERERSRRSRSRSDRDRERERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMGIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSVGAGVAGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFIQFANLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLPNGSAPAQQQAVNLPVGGPGIVPASTLPTAIMPTPGVAEPVGTPSECLLLKNMFDPITETEPDFDEDIKEDVAEECSKFGRVKHIYVDKNSAGFVYLRFETVQAASAAQQAMHLRWFARRLISAIFMQPQVYEEKFKGEA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1467 574 TIGRFAM SF-CC1: splicing factor, CC1-like family 87 570 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele21g1467 574 MobiDBLite consensus disorder prediction 1 200 - -
Lele21g1467 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 504 555 IPR000504 GO:0003723
Lele21g1467 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 375 IPR000504 GO:0003723
Lele21g1467 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 267 IPR000504 GO:0003723
Lele21g1467 574 SUPERFAMILY RNA-binding domain, RBD 194 285 IPR035979 GO:0003676
Lele21g1467 574 CDD RRM3_RBM39_like 479 561 - -
Lele21g1467 574 CDD RRM1_RBM39_like 202 274 - -
Lele21g1467 574 MobiDBLite consensus disorder prediction 10 200 - -
Lele21g1467 574 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 396 498 IPR029123 -
Lele21g1467 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 278 IPR000504 GO:0003723
Lele21g1467 574 Coils Coil 117 161 - -
Lele21g1467 574 FunFam Splicing factor CC1-like 287 392 - -
Lele21g1467 574 Gene3D - 475 574 IPR012677 -
Lele21g1467 574 FunFam Splicing factor, CC1-like protein 475 574 - -
Lele21g1467 574 Gene3D - 299 394 IPR012677 -
Lele21g1467 574 SUPERFAMILY RNA-binding domain, RBD 303 563 IPR035979 GO:0003676
Lele21g1467 574 Gene3D - 132 288 IPR012677 -
Lele21g1467 574 SMART rrm1_1 304 377 IPR000504 GO:0003723
Lele21g1467 574 SMART rrm1_1 202 274 IPR000504 GO:0003723
Lele21g1467 574 SMART rrm1_1 481 558 IPR000504 GO:0003723
Lele21g1467 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Lele21g1467 574 ProSitePatterns Rrf2-type HTH domain signature. 416 434 IPR030489 -
Lele21g1467 574 CDD RRM2_RBM23_RBM39 305 377 - -
Lele21g1467 574 FunFam Splicing factor CC1-like 127 286 - -
Lele21g1467 574 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1467 Lele-ChrLele21 23077231 23083419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1467 283 376 Eukaryotic Initiation Factors Gene Family AT4G34110 34.737 2.20e-07 52.0