Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1458 ATGAAACCCAAGTCCCCTACTACCTATCTCTTCTCTTTCTTCATATTCTTCTCCCTCGCCGTTCTTTCTCCCCAATCTGCAGCTTCATCCTCTGCTTTTTCTGCTTTCTTAGATTCCCCTCAACAATTGATCAACTTCAAGTCTTCTCTCCCAGACCAATCCCTTCTCAGAGATTGGCTTCCAAACCAAAACCCATGTTCTTTCACTGGGATTTCCTGCAAGCAGACCGGGGTTTATTCCATAGACCTCAGCTTCATCCCCTTGACCACAAACTTCAGTGTTGTCTCTGCCAATCTTCTCTCACTCAACCACCTGGAAGCTCTTAACCTCAAGCACACCAATCTCACTGGTAGCATTTCACATGGTTTGTTCAAGTGTGGTGCCTCATTGAGCAGTATAGATCTATCTCTGAACAGTTTGTCTGGTTCTGTCTCGGACATATCCTATCTCGGCTCCTGTTCAAGTCTGAAATCTCTCAACCTTTCGAATAATGCTTTTGAGTTTTCAGGGAAAGATTCCACCGGCTTGATACTCAATCTTCAAGTCCTGGATATCTCTCTGAATAATGGTATTTCTGGTCCAATTGTTCTCCCTTGGATCTTATCTGCAGGTTGCGACGATATGCAAGTGTTGGCTCTGAGAGGAAACAAAATCACCGGAGAAATTAATTTCTCTAACTGCCACAAATTGCAGCATTTGGACCTTTCTGCTAATAATTTCTCCGTCGCTATTCCTTCGTTCGGTGAATGTTCGGCGTTAGAGTACCTTGACATCTCCTCTAACAAGTATTTCGGCGACATTGGCCTCGCTCTCTCTTCCTGCAAGAAGCTCAGCCACCTTAACGTTTCACACAACGAGTTCTCCGGTCCGGTTCCGTCACTTCCTTTGGACTCTCTGCAGTTCTTTTATCTAGCCGGAAACAACTTCCATGGTCAGATTCCGGAACGACTGGTGGATTTGTGCACCACTCTCGTCGAGCTCGATCTTTCCGTGAACTCCCTCTCCGGTACTATTCCGCGCGGTTTTAGCGCCTGTTCTTCGCTGGAATTGTTTGATATATCTAAAAACAATTTTTCCGGTGAGTTACCGATTGAAATTTTCGTTGAGATGAGCAGCTTGAAGAAGCTAGTTCTTTCGTTCAACGATTTCGCTGGTAATTTGCCGGATAATCTGTCGAAGCTCACAAGCTTGGAATCGTTGGATTTGAGTTCCAATAATTTCTCAGGTTCAATACCTGGAGGGCTATGTGAAGATCCTAGGAACATTTTGAAAGAACTATTTCTGCAGAATAATGGGCTCACGGGTTTCATTCCACCAACACTCAGCAACTGTTCTCAGCTCGTTTCCTTGGATTTAAGTGTCAACTTCCTGAAGGGGACTATCCCTTCAAGCTTTGGGTCTCTTTCGAAGCTCCGTGATTTGATTATGTGGCTAAATAAGCTTGAAGGCGAAATACCACAAGAGCTCATGTACATTAAGACCCTTGAGAATTTGCTTTTGGACTTCAATGAGCTCACAGGGAACATTCCTTCTGGTTTAAGAAACTGCACAAACTTGAATTGGATCTCCTTGTCTAATAACAGATTGAGCGGGGAGATTCCTGCTTGGATTGGCCAGCTTTTCAATCTTGCAATCCTGAAACTCAGCAATAACTCGTTCTCCGGGAGGATTCCGCCGGAACTTGGCGATTGTCGCAGTTTGATATGGTTGGATCTGAATACAAATTCCCTAAATGGGTCAATTCCTCCTGAATTGTTCAAGCAATCTGGCAAAATCTCTGTGGATTTCATTCGTGGGAAAACTTATGTCTATATCAAGAATGATGGCAGTGAAGCATGCCATGGAGCTGGGAATTTACTGGAGTTTGCCGGTATCAGTCCGGGGCAGTTGAACAGAATTTCTACGAGGAATCCCTGTAACTTCACTAGAGTTTATAGTGGTAATCTCCAACCTACGTTTAGTAATAATGGTTCTATGATTTTTTTGGATCTTTCATACAATATGTTGTCGGGTAGTATACCGAAAGAGATTGGGAGCTTGTACTATGTAGACATTCTGAATTTGGGTCACAACAACCTATCTGGAAATATTCCGGAAGAGCTTGGGAAGGCAATAAAACTGGACATACTTGATCTCTCATGGAATAGGCTTGAAGGACAGATTCCACTGTCCTTGACCGGCCTTTCGATGCTCTCTGAAATTGATCTGTCAAACAACTTCCTAACGGGAGTGATTCCTGACTCTGCTCAATTTGTAACCTTTTCTCCCAACAGTTTCTTGAATAATTCTGGTCTCTGCGGATACCCTCTTACTCAATGTGGGTCACAGAAAGGATTAAGTTCAGATGCTCAACATCAGAAATCTCGCCGGAGGCAAGCATCCCTTGCAGGTAGTTTGGCTATCGGATTGTTGTTCTCCCTCTTCTGCATCTTTGGTGTAATTATAATTGCCTTAGAGACCAGAAAGAGGAGGAAGAAGAAGGAAGCTACACTAGATGCCTACATGGAGAGCAATTCTCACTCAGGTACAGGCAACAATACGAGCTGGAAGCTTACGAGTGCCCGCGAAGCGCTTAGCATAAACCTTTCGGCGTTCGAGAAGCCCATCCAGAAACTTACCTTTGCAGATCTCCTCGAAGCTACCAACGGCTTTCACAATGACAGTCTTATCGGTTCTGGTGGTTTTGGTGATGTCTACAAGGCTCAACTGAAGGATGGAAGTGTTGTGGCTATCAAGAAACTGATACATATCAGTGGTCAAGGTGACAGGGAATTCACAGCTGAAATGGAAACCATTGGGAAAATCAAGCATCGCAACCTAGTTCCCCTTCTGGGTTTCTGCAAGGTTGGGGAAGAAAGGCTCCTGGTTTATGAATTCATGAAATACGGAAGTCTAGAAGACGTCTTGCACGACCGGAAGAAAGCCGGGGTCAAGCTGAACTGGGCTGTAAGAAGGAAAATCGCTATCGGGGCTGCTCGGGGATTGGCTTTTCTTCACCACAATTGCATCCCACACATCATTCATAGAGACATGAAGTCCAGTAATGTATTGCTTGATGAGAATTTGGAATCCAGAGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTGTGGATACACATTTAAGTGTCAGCACACTAGCAGGCACACCTGGCTATGTTCCTCCTGAATATTACCAGAGCTTTAGATGCTCCACTAAAGGTGATGTATATAGTTATGGTGTAGTTTTACTGGAGCTGCTAACCGGGAAACGCCCAACGGATTCGGCGGATTTTGGCGATAATAATCTCGTGGGATGGGTTAAACAACATGTCAAACTGAAAGGGAATGAAGTTTTTGATCCAGAGCTCTTGAAAGAGGATCCTAGTCTTGAGATTGATCTTCAACAACACTTGAAAGTTGCTTGTGCTTGTTTAGACGATCGACCATGGCGCCGTCCCACGATGATTCAAGTCATGGCAATGTTCAAGGAAATCCAAGCTGGGTCTGGTATTGATTCTCAATCCACCATAGACACTGAAGATACATGCTTTGGTTCGGTTGAAATGGTAGATATGAGCATAAAAGAAGCCCCTGAAGTAAACAAGCCATAA 3594 0.4424 MKPKSPTTYLFSFFIFFSLAVLSPQSAASSSAFSAFLDSPQQLINFKSSLPDQSLLRDWLPNQNPCSFTGISCKQTGVYSIDLSFIPLTTNFSVVSANLLSLNHLEALNLKHTNLTGSISHGLFKCGASLSSIDLSLNSLSGSVSDISYLGSCSSLKSLNLSNNAFEFSGKDSTGLILNLQVLDISLNNGISGPIVLPWILSAGCDDMQVLALRGNKITGEINFSNCHKLQHLDLSANNFSVAIPSFGECSALEYLDISSNKYFGDIGLALSSCKKLSHLNVSHNEFSGPVPSLPLDSLQFFYLAGNNFHGQIPERLVDLCTTLVELDLSVNSLSGTIPRGFSACSSLELFDISKNNFSGELPIEIFVEMSSLKKLVLSFNDFAGNLPDNLSKLTSLESLDLSSNNFSGSIPGGLCEDPRNILKELFLQNNGLTGFIPPTLSNCSQLVSLDLSVNFLKGTIPSSFGSLSKLRDLIMWLNKLEGEIPQELMYIKTLENLLLDFNELTGNIPSGLRNCTNLNWISLSNNRLSGEIPAWIGQLFNLAILKLSNNSFSGRIPPELGDCRSLIWLDLNTNSLNGSIPPELFKQSGKISVDFIRGKTYVYIKNDGSEACHGAGNLLEFAGISPGQLNRISTRNPCNFTRVYSGNLQPTFSNNGSMIFLDLSYNMLSGSIPKEIGSLYYVDILNLGHNNLSGNIPEELGKAIKLDILDLSWNRLEGQIPLSLTGLSMLSEIDLSNNFLTGVIPDSAQFVTFSPNSFLNNSGLCGYPLTQCGSQKGLSSDAQHQKSRRRQASLAGSLAIGLLFSLFCIFGVIIIALETRKRRKKKEATLDAYMESNSHSGTGNNTSWKLTSAREALSINLSAFEKPIQKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGFCKVGEERLLVYEFMKYGSLEDVLHDRKKAGVKLNWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLESRVSDFGMARLMSAVDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHVKLKGNEVFDPELLKEDPSLEIDLQQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGIDSQSTIDTEDTCFGSVEMVDMSIKEAPEVNKP 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1458 1197 SMART serkin_6 884 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1458 1197 SUPERFAMILY RNI-like 296 585 - -
Lele21g1458 1197 SMART LRR_typ_2 565 588 IPR003591 -
Lele21g1458 1197 SMART LRR_typ_2 394 418 IPR003591 -
Lele21g1458 1197 SMART LRR_typ_2 540 564 IPR003591 -
Lele21g1458 1197 SMART LRR_typ_2 728 751 IPR003591 -
Lele21g1458 1197 SMART LRR_typ_2 102 126 IPR003591 -
Lele21g1458 1197 SMART LRR_typ_2 296 320 IPR003591 -
Lele21g1458 1197 CDD STKc_IRAK 890 1159 - -
Lele21g1458 1197 Pfam Leucine rich repeat N-terminal domain 41 73 IPR013210 -
Lele21g1458 1197 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 420 598 - -
Lele21g1458 1197 FunFam Serine/threonine-protein kinase BRI1-like 1 597 654 - -
Lele21g1458 1197 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 651 773 - -
Lele21g1458 1197 Pfam Leucine Rich repeat 394 409 IPR001611 GO:0005515
Lele21g1458 1197 Pfam Leucine Rich repeat 252 269 IPR001611 GO:0005515
Lele21g1458 1197 Gene3D Phosphorylase Kinase; domain 1 844 959 - -
Lele21g1458 1197 Pfam Protein kinase domain 884 1154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1458 1197 Pfam Leucine Rich Repeat 731 751 IPR001611 GO:0005515
Lele21g1458 1197 FunFam serine/threonine-protein kinase BRI1-like 2 845 959 - -
Lele21g1458 1197 FunFam Brassinosteroid LRR receptor kinase 960 1161 - -
Lele21g1458 1197 SUPERFAMILY Protein kinase-like (PK-like) 870 1161 IPR011009 -
Lele21g1458 1197 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 423 1157 - -
Lele21g1458 1197 Gene3D Ribonuclease Inhibitor 43 773 IPR032675 -
Lele21g1458 1197 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1006 1018 IPR008271 GO:0004672|GO:0006468
Lele21g1458 1197 Gene3D - 595 655 - -
Lele21g1458 1197 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 197 419 - -
Lele21g1458 1197 ProSiteProfiles Protein kinase domain profile. 884 1159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1458 1197 SUPERFAMILY L domain-like 646 770 - -
Lele21g1458 1197 Pfam Brassinosteroid receptor island domain 590 654 IPR045381 -
Lele21g1458 1197 Gene3D Transferase(Phosphotransferase) domain 1 960 1161 - -
Lele21g1458 1197 ProSitePatterns Protein kinases ATP-binding region signature. 890 913 IPR017441 GO:0005524
Lele21g1458 1197 SUPERFAMILY L domain-like 52 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1458 Lele-ChrLele21 22985310 22988903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1458 41 1193 Receptor kinase-like Gene Family AT4G39400 69.767 0.0 1558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lele21g1458 Pkinase 5.1e-45 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1458 21 22985310 22988903 Lele21g1458 21 22985310 22988903 ECH
Lele21g1458 21 22985310 22988903 Lele22g1453 22 20352882 20356333 ECH
Lele21g1458 21 22985310 22988903 Lele23g0555 23 4081966 4085559 hybridization
Lele21g1458 21 22985310 22988903 Lele24g1403 24 20059048 20061043 hybridization