LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1457	ATGTCAACGACGTCGTCTCAGGCGATTATGAACCAGAGCTTGTTTTATCATCATCAGCAGGATCAGATGGGGCTGCTTTCTTCTTTCCCTATTAACCTGGGCTTCAATAATTTCCCAGCTTCTTCTATGGATCATCAATTACCAGCTTTGAAATCCTTCAGTGGTTTATCTGCTTCAGCTCCTTCATCACTTGCAATATCTGAAGCAGTTTCTTCTGCAACTCCAAATCTAACACCTGAAACCCATATCTCTTTCACACCTTATCATAAGCCAATCAAAGAAGACATCACTCAACTCCTTTCCCCCAATAGATCCACTCTAATTAATCCATGGGCATGGGGATCAGAAGAGGGTGAGTGTAAGAGATCAAGTGAAGGAGAAGTTCATCATCATCAACATCACGAACTACTTGGGGTTTCAGCGATGAAGATGAAGAGACCAATGAAGGGAAGAAGGAAGGTGAGAGAACCCAGGTTTTGCTTCAAGACACTCAGCGATGTCGATGTCTTGGACGATGGCTATAAGTGGAGGAAGTACGGCCAAAAAGTCGTCAAGAACACTCATCTTCCCAGGAGCTACTATCGGTGCACGCAAGACAACTGTAGGGTGAAAAAGAGGGTGGAGAGGCTATCAGAGGATCCGAGGATGGTGATAACGACGTACGAAGGGAGGCATGCTCATTCTCCTTCCAACGATCCTGAAGATTCTCAAACTCATTCTTCTCAGCTTACCAGTTTTTTGTGGTAG	747	0.4471	MSTTSSQAIMNQSLFYHHQQDQMGLLSSFPINLGFNNFPASSMDHQLPALKSFSGLSASAPSSLAISEAVSSATPNLTPETHISFTPYHKPIKEDITQLLSPNRSTLINPWAWGSEEGECKRSSEGEVHHHQHHELLGVSAMKMKRPMKGRRKVREPRFCFKTLSDVDVLDDGYKWRKYGQKVVKNTHLPRSYYRCTQDNCRVKKRVERLSEDPRMVITTYEGRHAHSPSNDPEDSQTHSSQLTSFLW	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1457	248	MobiDBLite	consensus disorder prediction	233	248	-	-
	Lele21g1457	248	FunFam	WRKY transcription factor 57	156	230	-	-
	Lele21g1457	248	Gene3D	WRKY domain	157	223	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele21g1457	248	Pfam	WRKY DNA -binding domain	171	227	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele21g1457	248	SMART	WRKY_cls	170	229	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele21g1457	248	ProSiteProfiles	WRKY domain profile.	165	230	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele21g1457	248	SUPERFAMILY	WRKY DNA-binding domain	163	229	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele21g1457	248	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	107	236	IPR044810	GO:0003700
	Lele21g1457	248	MobiDBLite	consensus disorder prediction	224	248	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1457	Lele-ChrLele21	22971265	22973584	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1457	31	248	WRKY Transcription Factor Family	AT4G39410	44.358	2.24e-56	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele21g1457		WRKY	1.9e-24	CL0274