Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1404 ATGGATCCTTTCGGTGGAGAGTTGATGAAAGCACTCCAACCTTTCAACCCTCCTTCATCATCTTCCTTTACTTCTCTCCTCAATTCCTCCTTCCAAACAAGTCCCATCAGGCTCAACCAGCTCACACCATCACAAATTCAAGAAATTCAATCCCAAATCCACCCAAAACGTCGCCGTTTCACTCAGAAATCCCTCCCCATGAAGCAACCTGGTAATAGTCCTCCTAAACCAACAAAACTCTACAGAGGAGTCAGACAGAGACATTGGGGTAGATGGGTCGCCGAGATCCGACTGCCCAAGAACCGTACCCGACTCTGGCTAGGCACCTTCCATACTGCAGAGGAAGCTGCTTTAGCCTACGACAACGCAGCCTATAAGCTCCGAGGAGATTTTGCTCGCCTCAATTTCCCTCACTTGCGCCACCACGGAGCTCAGGTCATTTCTGAATTCGGCGATTACAAGCCTCTTCACTCATCTGTACACGCCAAGCTCCAAGCCATATCTGAAAGCTTGGCAGACAATTCCCGGAACCAGGGTAATGCAGAGCATCCTCATCTTCAGAATACACATGTTTGTTCTACTCTCTCTAACTTAGCCTCGTCATCCGATGAATCGGAGATTAGTTACTTGGATTTCTCGGATTATAAAGTGGATGAAACAGAGGTTGTTGGTTTGGACAAGCATCCTTCTATTGAGATTGATTGGTCTGCTATCTGA 717 0.4742 MDPFGGELMKALQPFNPPSSSSFTSLLNSSFQTSPIRLNQLTPSQIQEIQSQIHPKRRRFTQKSLPMKQPGNSPPKPTKLYRGVRQRHWGRWVAEIRLPKNRTRLWLGTFHTAEEAALAYDNAAYKLRGDFARLNFPHLRHHGAQVISEFGDYKPLHSSVHAKLQAISESLADNSRNQGNAEHPHLQNTHVCSTLSNLASSSDESEISYLDFSDYKVDETEVVGLDKHPSIEIDWSAI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1404 238 ProSiteProfiles AP2/ERF domain profile. 80 137 IPR001471 GO:0003700|GO:0006355
Lele21g1404 238 FunFam Ethylene-responsive transcription factor 2 79 138 - -
Lele21g1404 238 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Lele21g1404 238 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Lele21g1404 238 SMART rav1_2 80 143 IPR001471 GO:0003700|GO:0006355
Lele21g1404 238 MobiDBLite consensus disorder prediction 50 80 - -
Lele21g1404 238 Gene3D AP2/ERF domain 80 138 IPR036955 GO:0003700|GO:0006355
Lele21g1404 238 Pfam AP2 domain 81 129 IPR001471 GO:0003700|GO:0006355
Lele21g1404 238 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Lele21g1404 238 CDD AP2 79 139 IPR001471 GO:0003700|GO:0006355
Lele21g1404 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 17 238 - -
Lele21g1404 238 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1404 Lele-ChrLele21 22522484 22523200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1404 2 238 AP2-EREBP Transcription Factor Family AT4G39780 49.808 1.22e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele21g1404 AP2 6.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1404 21 22522484 22523200 Lele23g0611 23 4609818 4611419 hybridization
Lele21g1404 21 22522484 22523200 Lele24g1351 24 19570203 19578417 hybridization