Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1401 ATGGAGAGATTCTCCATCGATGATGAGCAAAGAGGGCACGGCTCTTATGCTGATTTGATTACGTTGGTTTTGGGTGGATTCCAAACCAATTGTTTTGGTAGAGTGGGGCCCAGTCGGAAACTGGAGCCCATTCATGTGGTAAAGAGTTGTAAACGGGCCAAGGGGTCCTTCAACGTCATCTCTATCTCATCATCTTCAATGGCAGACACTTCGCCGGACCGGAGATCGGGTTGTGGGTTACTGAGTGCAGTGTTTGGACGACGCCCACGAAGATCACACCCTTCTCCTACGTCTCATCACGTTAATAATAATAATAATGTCATGCAAAATGGCAAACCGTCCTCAGACATGTGGAATTCAAAGCGACGGCGAGGCCCCTCCGACGACCACGCCGATTTACTCCTCACCAACCAACCACAGACGGGTGTCGTCATGATTCAAAACCAGCAAATGAAACAACATGTCAACGAAACATCAAAAGCGACAACACAACAAGGCCGATCAAAGGTTCCCAAAGAAGCCCTCGGACTTTCCGGCGAGCTTGAAAGTTATATCACCGATCACCAGAAATCCAAAGGAAGTAGCACTCTTGTTCGCGCTTCCTCCAGCAACGTGATGCTGTTTGGAGATTTAGGAAACTTGCGACAAGGTGGTGGAGGAGGGAATAATACAAATTCTTACAGCGTAATAGATCACCTTCCTAAGCCTAAAGAAGAAACCTTCATAGCTAATAATGGTGAAAGAAGATGCACAAATAATGCAGGGAATAGAACGAAAGAGAACAAGAAAGAAGAAGGGGTTTCTCTGTGCAGAGCTATATCAACGAGAATGGATCCAGAGCAGTTGAAGATAATGGGGAATGAGGATTACAAGAACGGGAGGTTTGCAGAGGCATTGGCTCTGTATGATGCAGCCATCGCCATTGATCCTAACAAAGCTTCATATAGAAGTAACAGAAGTGCGGCATTAACGGCTCTTGGTAGGCTTATCCAGGCAGTCTTTGAGTGTAGAGAAGCCATTCGAATCGAACCTCATTACCATAGAGCTCATCATCGATTGGGAAGTTTGTACCTTAGATTAGGAGAAACAGACAAAGCACAGTATCATTTGAAACATGCGGGACCAGATGCAGATCCTGATGAGATTGCTAAGGTGAGGAATCTTCAAGTTAATCTGAACAAGTGCACTGAGGCTCGTAGGTTACGAGATTGGAACACAGTTAAAAAGGAGGCCAACTCTGCTATATTATGTGGTGCAGATTCTGCTCCTCAGATATTTGCTTTGCAAGCTGAAGCCCTTCTAAAGCTTCGTAAGCATCATGATGCCGTTGAAGTAATGTCAAAAGGTCCTAATTTTACAGACGAAGAGCTGAACAAGTTCCTTGGACCTATTGGTTTCGCTAATTTGTTGGTCACACGGGCTCAGGTTGATATGGCTGCTGGAAGATTTGATGATGCATTGGAGGTGGCTCAACGAGCAGTGAAGTTGGACTCAAATAATAAGGAAGCAGGCATGGTGATGAGGAGAGCAGGAGCAGTAGCAGCAGCAAGATCACAAGGAAACGAGCTTTTTAGAGGGAGTAGATTCTCAGAGGCATTAACAGTCTATGGAGAGGGGCTTGAGCATGATCCCTGTAACTCAGTTTTGTTGTGCAACCGAGCCGCTTGCCGGTCGAAATTGGGCCAATTCGAGAGAGCCGTGGAGGATTGCACTGCTTCTCTCAATCTAAGGCCTTCGTACAGCAAAGCCAGATTGAGAAGAGCCGACTGTAATGCTAAGTTGGAAAGATGGGAAGCTTCAATACAAGACTACGAGATATTTCTGAGAGAAACACCAGAAAATGAGGAAGTAAGAAAGGCGTTGCTGGAGGTTCAGAAACAGCTAAAGGGACAACGAGGAAAAGAGTTGTAG 1911 0.4579 MERFSIDDEQRGHGSYADLITLVLGGFQTNCFGRVGPSRKLEPIHVVKSCKRAKGSFNVISISSSSMADTSPDRRSGCGLLSAVFGRRPRRSHPSPTSHHVNNNNNVMQNGKPSSDMWNSKRRRGPSDDHADLLLTNQPQTGVVMIQNQQMKQHVNETSKATTQQGRSKVPKEALGLSGELESYITDHQKSKGSSTLVRASSSNVMLFGDLGNLRQGGGGGNNTNSYSVIDHLPKPKEETFIANNGERRCTNNAGNRTKENKKEEGVSLCRAISTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLIQAVFECREAIRIEPHYHRAHHRLGSLYLRLGETDKAQYHLKHAGPDADPDEIAKVRNLQVNLNKCTEARRLRDWNTVKKEANSAILCGADSAPQIFALQAEALLKLRKHHDAVEVMSKGPNFTDEELNKFLGPIGFANLLVTRAQVDMAAGRFDDALEVAQRAVKLDSNNKEAGMVMRRAGAVAAARSQGNELFRGSRFSEALTVYGEGLEHDPCNSVLLCNRAACRSKLGQFERAVEDCTASLNLRPSYSKARLRRADCNAKLERWEASIQDYEIFLRETPENEEVRKALLEVQKQLKGQRGKEL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1401 636 Gene3D Tetratricopeptide repeat domain 277 633 IPR011990 GO:0005515
Lele21g1401 636 ProSiteProfiles TPR repeat profile. 467 500 IPR019734 GO:0005515
Lele21g1401 636 SUPERFAMILY TPR-like 252 621 IPR011990 GO:0005515
Lele21g1401 636 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 73 635 IPR044534 -
Lele21g1401 636 Pfam TPR repeat 286 327 - -
Lele21g1401 636 SMART tpr_5 513 546 IPR019734 GO:0005515
Lele21g1401 636 SMART tpr_5 467 500 IPR019734 GO:0005515
Lele21g1401 636 SMART tpr_5 547 580 IPR019734 GO:0005515
Lele21g1401 636 SMART tpr_5 279 312 IPR019734 GO:0005515
Lele21g1401 636 SMART tpr_5 581 614 IPR019734 GO:0005515
Lele21g1401 636 SMART tpr_5 313 346 IPR019734 GO:0005515
Lele21g1401 636 MobiDBLite consensus disorder prediction 87 128 - -
Lele21g1401 636 MobiDBLite consensus disorder prediction 96 116 - -
Lele21g1401 636 ProSiteProfiles TPR repeat profile. 279 312 IPR019734 GO:0005515
Lele21g1401 636 Pfam Tetratricopeptide repeat 473 535 - -
Lele21g1401 636 Pfam Tetratricopeptide repeat 559 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1401 Lele-ChrLele21 22483743 22489966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1401 280 415 U-box Gene Family AT3G07370 27.027 5.69e-06 46.6