Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1378 ATGGCTATCTGTATTGCAAAACGTCCACCACTCTGTCGAATACCGGCGGCCATTGCGGCAGCACCAAAACCCTTAGCCGCACGGCCTCACTCCGGAGAGCAAAGAAGAAAAGGGGTTATGAAGAAGTGGAGAAGTGCGGTCTGTGAGAAGAATCTTTGGCGAGGAAGTGGGTGGCAACCAAGGAGGATAAGAGCCTTGGCGAGAGTAATGGAGGAGGAAGAACATGAGGTGTACGGAGGCGACATCCCAGACATGGGCGAGATGGAAGGAGATTTGGATTCGCATCATGCCGATGTCGTTATGTCTGCTGCTGACGACGACGCCGTCAAGGAGCTGGACGAGATGAAGAAAAGATTGAAGGAAATGGAGGAAGAAGCCGCGGCTCTCCGTGAAATGCAAGCTAAGGTGGAGAAGGATATGGGTGCTGTTCAAGATCCTGAGAGTGCAGCTGCTTCTCAAGCAAGCAAGGAGGAGGCAGATTATCGATCTGTTTTTGTTGGCAATGCAGAATGTGCTGAAGATTCGTCGAAGGAGATGGCTCATGGTTCATCAGAAGAGCATTCTGCAACTGCTGGGGATGCAAAAGGTCCATGGTACCTATGTTGTGTGCCATTTAGTTGGCATGCCAAGGCTTCCTTTACAGTTCTGGTAGTTCATAGGCCAGTAAAATTTGGTACTGTTGTAAATTTTCTTTTGGAAAAGACCAGTATAATGCACAAAATGGTTTCTCTGAAGATTGAGAAGATGCAAGACTCTGGTATCAAGTCTTCTAAAATAATTGAGATTTTGCAGGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTCCAGTCATGTGGGGCGGTGAATAGGGTGACTATCCTTACAGACAAGTTTGGGCATCCAAAAGGTTTTGCTTACGTGGAATTCCTTGAACCTGAAGCTGCTCAAGAGGCTCTTGGCTTGAATGAATCTGAATTGCACGGTCGTCAATTGAAGGCATGTCATGCCAAAGAGGACCAATGTCCCCGGAATGAAACAGTATCGACCCAGGAAGGTTCCCAGGTTCAGAAGGCCAAGTCGTTACATGTCATATTATTAGAAGACAGTATGCAATCTAAAGATATTATGATGATTGCTTCCCAGAACAGTTTTCTTGTTTCTCTTTACTATTGCCTTAATGGAACACTTAAGTGCTTAGTGATGATATTCACTTATGGGACTGGAGATTTTCTTCATAGATGTCACTGGGTTAGTTACCATTGTTGTGAAGTTGAAAGAATCTGTGGCTATGAAGGAAGAGTTCTCGCTGAAGAAGAAGAGCCTGATGTGTACAGAATGCGGATGCCTGATAAAGATTGCCCTGGACTAACTATGTCAAGGGCCCTTTGGGAACTTTTGCTTAAAAGATTATGGCCTCATCTCAGCTCCCGACGTCTTCTACCGAAGAAAAACCAAGCAGTATGA 1452 0.4566 MAICIAKRPPLCRIPAAIAAAPKPLAARPHSGEQRRKGVMKKWRSAVCEKNLWRGSGWQPRRIRALARVMEEEEHEVYGGDIPDMGEMEGDLDSHHADVVMSAADDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKDMGAVQDPESAAASQASKEEADYRSVFVGNAECAEDSSKEMAHGSSEEHSATAGDAKGPWYLCCVPFSWHAKASFTVLVVHRPVKFGTVVNFLLEKTSIMHKMVSLKIEKMQDSGIKSSKIIEILQVDYACTPEEVQQHFQSCGAVNRVTILTDKFGHPKGFAYVEFLEPEAAQEALGLNESELHGRQLKACHAKEDQCPRNETVSTQEGSQVQKAKSLHVILLEDSMQSKDIMMIASQNSFLVSLYYCLNGTLKCLVMIFTYGTGDFLHRCHWVSYHCCEVERICGYEGRVLAEEEEPDVYRMRMPDKDCPGLTMSRALWELLLKRLWPHLSSRRLLPKKNQAV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1378 483 Coils Coil 105 139 - -
Lele21g1378 483 MobiDBLite consensus disorder prediction 137 156 - -
Lele21g1378 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 328 IPR000504 GO:0003723
Lele21g1378 483 CDD RRM_II_PABPs 264 328 - -
Lele21g1378 483 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 93 339 - -
Lele21g1378 483 SUPERFAMILY RNA-binding domain, RBD 254 341 IPR035979 GO:0003676
Lele21g1378 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 334 IPR000504 GO:0003723
Lele21g1378 483 Gene3D - 242 343 IPR012677 -
Lele21g1378 483 SMART rrm1_1 259 330 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1378 Lele-ChrLele21 22260610 22271146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1378 419 464 PP2C-type Phosphatase Gene Family AT5G01700 65.217 5.46e-12 65.5