Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1368 ATGAAGAGATCACTCGAAAGCTCCGATTCTTTGGGTACTTTGATCCCTATGTGTCCTCCATCCACAGATGAACACAGTCCTAGGAACAATAATAACAATTATTTGTATGGGGGGGAGTTCCAAGCCATGATGTTGGATGGATTAGACGAGGAAGGGTGTGTGGAAGAATCGAGCCATTTAATGATGTCGGAGAAGAAACGGCGTCTGAGTGTTGATCAAGTTAAGGCTTTAGAGAAGGACTTCGAGGTCGAAAACAAGCTTGAACCTGAGAGGAAAGTGAAGCTTGCTCAAGAACTTGGATTACAACCTCGTCAAGTTGCAGTTTGGTTTCAGAACCGTCGTGCACGGTGGAAAACGAAGCAATTAGAGAGAGATTATGGCGTTCTTAAAGCCAATTATGATGCCCTCAAAGTTAACTTCGACACCCTCCAACAGTACAACGAAGCATTGCTCAAAGATATTAAGGAATTGAAATCGAGATTAAACGAGGAGCAGACAGACAGTGATATTTCAGTGAAGGAAGAGATGACGACGGGTTCTGATTCCGACGAGAAAAACTTCGAACGGAGCAACCCGCCACCGGCTGAAACCTCCATTATTCTTGAATCACAGTGCAAGGACTTGAATTATGGCTGCTTCAATGGAGTAGTCGTCGGAGGAGGTGGTGGTGCTTCACTCATAGCACCAGTGGATCATTTCAAAGACGGTGCTTCCGATAGCGACTCGAGCGCAATCTTGAACGAAGATAATAATAACAGCCCCAACGCCGCCATTTCGTTGCCGGCTGGTCTTCGTCATCAGAGCCACCACCACCAACACTACATTTTGATGTCTCCGCCGTCGTCGCCGTCGTCGTCCATGAACTGCTTTCAATTCCAGAAAACAACATACCAGAGTCAGTATGTTAAGATGGAAGAACACAACTTCTTCAGCGCCGAAGAATCCTGCAATTTCTTCTCCGAAGAACAAGCACCCTCCCTCCATTGGTACTGTTCTGATAATCAATGGAGTTAA 1014 0.4586 MKRSLESSDSLGTLIPMCPPSTDEHSPRNNNNNYLYGGEFQAMMLDGLDEEGCVEESSHLMMSEKKRRLSVDQVKALEKDFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKVNFDTLQQYNEALLKDIKELKSRLNEEQTDSDISVKEEMTTGSDSDEKNFERSNPPPAETSIILESQCKDLNYGCFNGVVVGGGGGASLIAPVDHFKDGASDSDSSAILNEDNNNSPNAAISLPAGLRHQSHHHQHYILMSPPSSPSSSMNCFQFQKTTYQSQYVKMEEHNFFSAEESCNFFSEEQAPSLHWYCSDNQWS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1368 337 MobiDBLite consensus disorder prediction 240 258 - -
Lele21g1368 337 SMART HOX_1 63 124 IPR001356 GO:0003677
Lele21g1368 337 SUPERFAMILY Homeodomain-like 60 122 IPR009057 -
Lele21g1368 337 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Lele21g1368 337 MobiDBLite consensus disorder prediction 1 32 - -
Lele21g1368 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 304 IPR045224 GO:0003700
Lele21g1368 337 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Lele21g1368 337 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Lele21g1368 337 MobiDBLite consensus disorder prediction 162 195 - -
Lele21g1368 337 Coils Coil 140 167 - -
Lele21g1368 337 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Lele21g1368 337 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Lele21g1368 337 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Lele21g1368 337 MobiDBLite consensus disorder prediction 162 190 - -
Lele21g1368 337 MobiDBLite consensus disorder prediction 238 259 - -
Lele21g1368 337 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
Lele21g1368 337 Gene3D - 62 127 - -
Lele21g1368 337 CDD homeodomain 65 121 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1368 Lele-ChrLele21 22138051 22139362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1368 1 336 Homeobox Transcription Factor Family AT2G22430 45.628 1.33e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele21g1368 Homeodomain 3.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1368 21 22138051 22139362 Lele21g1368 21 22138051 22139362 ECH
Lele21g1368 21 22138051 22139362 Lele22g1358 22 19389722 19391029 ECH
Lele21g1368 21 22138051 22139362 Lele23g0654 23 5029173 5030474 hybridization
Lele21g1368 21 22138051 22139362 Lele24g1316 24 19180277 19181589 hybridization