Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1346 ATGGAGAAAAAAGGTGGGTTTCTTCGTTATGCAGATAGGGTTGATAAGTTACTTTTGTTGTTTGGGACATTGGGTTGCATTGGAGATGGCCTTCAAACTTCTGTCACAATGCTTGTTCTTGGCAGTTTGATCGATGACTATGCAAATCATACGTCTGATTCTCAGAATGATGCCTTCAAGCATTCTGTAGACAAGTATGCTCTCAGGCTGCTCTATATTGCCATTGGAGTGGGCTTATCTGCATTTATCGAAGGACTATGTTGGACAAGAACTGCAGAAAGACAAACATCTCGCATGAGAATTGCATATCTTCAATCAATCCTTAGGCAAGAAGTTGGTTTCTTTGATAGCCAATCAGGCTCTTCCACCACCTTCCAAGTTATTGCCACCATATCTTCTGATGCTCAAACCATCCAAGACACCTTGTCTGAAAAGATACCCACTTGTTTGGTTCACCTTTCAGCAGTGTTCTCAAGCTTCATAGTAGCTTCAATTCTGTCATGGAGATTAGCAGTATCTGCATTTCCATTTTCAATTATGATGATAATGCCAGCAATCATATTTGGGAAGAAACTAAAAGAGCTAGGAAGTCAGATGAAGGATGCTTATGGTGTTGCAGGTGGCATAGCAGAGCAAGCAATCTCATCGATTTGCACGGTATATTCATATGTAGGAGAGAAACAAACACTAGAGAGGTTTGGCTCAGCTCTTGAAACAAGCATGAAGGTTGGTATTAAGCTTGGTTCAACCAAAGGTGTGGTGATTGGAAGCTTTGGATTGATTTATGCAACATGGGCATTCCAAACATGGGTTGGAAGCATTTTGGTCTCTCAAAGAGAAGAAAGTGGTGGAAAAGTTTTTGTTGCTGAAATCTGTATCATCTGGGGAGGATTGTCATTGATGAGTGCACTTCCAAGTCTTGCTTCTTTAGCAGAGGCAACAGTTGCAGCTACTCGAATTTATGAGATGATTGATCGAGTGCCGTTTATACACTCTGCTAGAGAAAAGGGGAGGATTTTGAAGGATGTGAGAGGAGAGATAACTTTCAAAGATGTTGACTTTAGCTACCCATCAAGGCCAGATACTTCAATTCTAAGAGGGCTCAATCTGAAATTTAGAGCAGGCAAAACAGTAGGTCTTGTTGGAGGGAGTGGTTCTGGGAAATCTACAATAATCTCTTTGATTGAAAGGTTTTATGATCCTACATGTGGAAGCATATTGCTTGATGGGCATGATATAAAGAAATTTCATGTCAAGTGGTTAAGATCCCAGATGGGACTCGTAAATCAAGAGCCAATTCTCTTTGCAACATCCATTAGAGATAACATCCTACTAGGAAATGAAGCAGCTTCAATGGAAGATGTTGAAAATGCAGCAAGGGCTGCCAATGCACATGATTTCATTGTCAAACTTGTTGATGGATATGAAACTCAAGTGGGGCAACTAGGAACCCAATTGTCTGGAGGGCAAAGGCAAAGGATTGCCATAGCAAGGGCTCTGATAAGAAACCCTGAAATCTTGCTACTAGATGAAGCTACCAGTGCTCTTGATTCACAGTCTGAAAAATTAGTACAAGAAGCCCTGGATTTAGCTTCCCAAGGAAGAACCACAATCATCGTAGCCCATCGCCTTTCAACGATTCGTAAGGCTGACTTCATAGTAGTTCTTGAATCAGGAAAAGTCATTGAATCAGGTTCCCATGATGAACTTATCCAAATCAACAATGGACAAGGTGGAACATACAGCAAAATGCTTCAATTGCAACAATCGGCCCTTGAAAACAAAGAGGAATCCATTTACTACACAAACACAAGTCCACTAAATGTCGAAGCTCCAAGAACATCATATTCAAGTTGGCATAGTAGCCCAGTTATGCCATTTAGCCCTATATATTCTTTCAGCATTGCAGATTCTCCCCTCGATGATTACTTTGACAACAAGAAATCTTCTGATTCAGATCAAAGTTTCTCGCAATGGCGCTTGATACAGATGAATGCACCTGAATGGAGGCAAGCTTTGCTTGGGTGTTTAGGATCCATGGGATCTGGAATATGCCAACCAATATACTCATATTGCTTGGGAATTGTTGCATCTGTTTACTTCATAAAAGACAAACATCGAATCAAATCCGAAATCAGGTTGTACTCGATCATCTTTTGCACGCTAGCGATTGTGAACATCATTTCAAGTCTCATTCAGCAGTATAATTTCTCTGTCATGGGAGAGAGATTGTTGAAAAGAGTAAGAGAAAACTTGCTGGCTAAAGTTTTGACCTTTGAGATTGGATGGTTTGACCATGAAGATAACACTAGTGCAGCAATTTGTACACGGCTAGCGAATGAAGCTAACTTGGTTCGATCTCTCATTGCAGAAAGAATGTCATTGTTGGTTCAAGTTTTCTTTATGGCATCTCTGGCTTTTATACTTGGCTTAGTTGTTTCATGGAGGGTGGCTATTCTGATGATTGCAATGCAGCCTTTGATCATTGCTTGTTTCTATTCCAAAAGTGTCTTGAGGAAAAATATGTCTGTCAAAGCTCAAAAGGCTCAGAAAGAGGGAAGTCAATTAGCAATGGAAGCTACCATAAACCATAGGACTGTTGCAGCATTCTCATCAGAGAGAAGGATTCTGAATCTCTTTAAGATTGCCATGAAAGGACCACACAAAGAAAGCATCAAGCAATCGTGGATTTCGGGTTCGATCATGTCAATTTCTCAGTTCTTGACAACTGCTTCTATAACTATCACTTTTTGGTATGGAGGGAGGCTTTTGAATCAAGGGTTGGTGGAATCAAAAAACCTTTTGCAGGTTTTTCTGATCTTGATGGGAACTGGAAGACAAATTGCAGAAACAGCAAGTATGACTTCTGATATAGCCAAAAGTGGGAGAGCCATTAGTTCAATTTTTGCCATTTTGGACAGGAAAACTCAGATTGAACCTGAAGATGAAGAAGATGATGACCATACGCATAAGAAGTCTAAAAAGAAGCCAATTAAGGGCAACATAAAGTTGCAGAATTTGTTCTTTGCTTACCCAACAAGGCCTGATCAAATGATACTCAAGGGTCTAGGTCTTGAGATTGAATCTGGGAAAACAATAGCACTTGTGGGACAAAGTGGCTCGGGGAAATCCACTATTATTGGATTAATTGAAAGGTTTTATGACCCTGTGAAAGGATCAATATCTATAGATAACTGTGACATTAAGGAATTCAATCTGAGAAAGTTGAGATCACAGATTGCCTTGGTGAGTCAGGAGCCTACTCTATTCGCAGGAACTATACGCGACAACATAGTTTATGGGACAAAGGAAGCATCAGAGGAAGAAATCAGAAGGGCGGCTCATCTTGCTAATGCTCATGAGTTCATAAGTTCAATGAAAGATGGATATGATACAAATTGTGGAGAAAGAGGAGTGCAACTATCAGGAGGACAAAAGCAAAGGATAACAATAGCAAGAGCAATACTGAAGAAGCCATCAATCTTGCTGTTAGATGAAGCAACAAGTGCTCTTGATAGTGTATCAGAGAATGTGGTGCAGGAAGCACTGGAGAAGATGATGGTGAGAAGAACATGTGTAGTTATAGCCCATAGATTGTCCACAATACAGAGTGTAGATTCCATAGCTGTGATTAAGAATGGCAAGTTACAAGAATTAGGATCTCACTCTGAGTTATTGGCCATAGGACAAAAAGGGGCATACTACTCCATGCTTAAGTTGCAGCAGAGTCACTCTACATAA 3741 0.4039 MEKKGGFLRYADRVDKLLLLFGTLGCIGDGLQTSVTMLVLGSLIDDYANHTSDSQNDAFKHSVDKYALRLLYIAIGVGLSAFIEGLCWTRTAERQTSRMRIAYLQSILRQEVGFFDSQSGSSTTFQVIATISSDAQTIQDTLSEKIPTCLVHLSAVFSSFIVASILSWRLAVSAFPFSIMMIMPAIIFGKKLKELGSQMKDAYGVAGGIAEQAISSICTVYSYVGEKQTLERFGSALETSMKVGIKLGSTKGVVIGSFGLIYATWAFQTWVGSILVSQREESGGKVFVAEICIIWGGLSLMSALPSLASLAEATVAATRIYEMIDRVPFIHSAREKGRILKDVRGEITFKDVDFSYPSRPDTSILRGLNLKFRAGKTVGLVGGSGSGKSTIISLIERFYDPTCGSILLDGHDIKKFHVKWLRSQMGLVNQEPILFATSIRDNILLGNEAASMEDVENAARAANAHDFIVKLVDGYETQVGQLGTQLSGGQRQRIAIARALIRNPEILLLDEATSALDSQSEKLVQEALDLASQGRTTIIVAHRLSTIRKADFIVVLESGKVIESGSHDELIQINNGQGGTYSKMLQLQQSALENKEESIYYTNTSPLNVEAPRTSYSSWHSSPVMPFSPIYSFSIADSPLDDYFDNKKSSDSDQSFSQWRLIQMNAPEWRQALLGCLGSMGSGICQPIYSYCLGIVASVYFIKDKHRIKSEIRLYSIIFCTLAIVNIISSLIQQYNFSVMGERLLKRVRENLLAKVLTFEIGWFDHEDNTSAAICTRLANEANLVRSLIAERMSLLVQVFFMASLAFILGLVVSWRVAILMIAMQPLIIACFYSKSVLRKNMSVKAQKAQKEGSQLAMEATINHRTVAAFSSERRILNLFKIAMKGPHKESIKQSWISGSIMSISQFLTTASITITFWYGGRLLNQGLVESKNLLQVFLILMGTGRQIAETASMTSDIAKSGRAISSIFAILDRKTQIEPEDEEDDDHTHKKSKKKPIKGNIKLQNLFFAYPTRPDQMILKGLGLEIESGKTIALVGQSGSGKSTIIGLIERFYDPVKGSISIDNCDIKEFNLRKLRSQIALVSQEPTLFAGTIRDNIVYGTKEASEEEIRRAAHLANAHEFISSMKDGYDTNCGERGVQLSGGQKQRITIARAILKKPSILLLDEATSALDSVSENVVQEALEKMMVRRTCVVIAHRLSTIQSVDSIAVIKNGKLQELGSHSELLAIGQKGAYYSMLKLQQSHST 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1346 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele21g1346 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 588 IPR027417 -
Lele21g1346 1246 Gene3D ABC transporter type 1, transmembrane domain 69 969 IPR036640 GO:0005524|GO:0016020
Lele21g1346 1246 Pfam ABC transporter 365 514 IPR003439 GO:0005524
Lele21g1346 1246 Pfam ABC transporter transmembrane region 674 941 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele21g1346 1246 Pfam ABC transporter transmembrane region 21 288 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele21g1346 1246 FunFam ABC transporter B family member 4 992 1245 - -
Lele21g1346 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Lele21g1346 1246 ProSitePatterns ABC transporters family signature. 486 500 IPR017871 GO:0005524|GO:0016887
Lele21g1346 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1002 1238 IPR003439 GO:0005524
Lele21g1346 1246 CDD ABC_MTABC3_MDL1_MDL2 347 588 - -
Lele21g1346 1246 Pfam ABC transporter 1020 1169 IPR003439 GO:0005524
Lele21g1346 1246 FunFam ABC transporter B family member 4 337 596 - -
Lele21g1346 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 583 IPR003439 GO:0005524
Lele21g1346 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 673 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele21g1346 1246 SUPERFAMILY ABC transporter transmembrane region 660 980 IPR036640 GO:0005524|GO:0016020
Lele21g1346 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 320 - -
Lele21g1346 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 995 1241 IPR027417 -
Lele21g1346 1246 SMART AAA_5 1029 1215 IPR003593 -
Lele21g1346 1246 SMART AAA_5 374 560 IPR003593 -
Lele21g1346 1246 ProSitePatterns ABC transporters family signature. 1141 1155 IPR017871 GO:0005524|GO:0016887
Lele21g1346 1246 PANTHER ABC TRANSPORTER B FAMILY 8 727 - -
Lele21g1346 1246 Gene3D - 992 1246 IPR027417 -
Lele21g1346 1246 SUPERFAMILY ABC transporter transmembrane region 7 328 IPR036640 GO:0005524|GO:0016020
Lele21g1346 1246 Gene3D - 345 606 IPR027417 -
Lele21g1346 1246 CDD ABC_MTABC3_MDL1_MDL2 1002 1241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1346 Lele-ChrLele21 21911043 21917202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1346 674 1246 Calmodulin-binding Proteins AT2G36910 36.678 1.06e-105 361