Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1322 ATGGACAATGGTTTCTCTTCTCCTCGACGCGGTGCTTTTCCAGCTGGTCTGCGAGTTCTCGTCGTTGATGATGACCCAACATGGATCAGGATCCTTGAAAAGATGCTCAAGAAATGCTCCTATGATGTAACAACATGTGGTTTAGCAAGGGAGGCTCTGAACTTGCTTCGTGAAAGAAAAGACAGATACGACATTGTTATCAGTGATGTAAACATGCCAGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCGGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTCAAGCCAATTCGAATGAAAGAACTGCGAAATATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGACAAGAGAATTTGAAGGCCATGAAGGATTTGAGGGCCTTCATTTAATGAGAAATGGATCAGATCAGTCTGAAGATGGGATGTCGTTCGCTTTTGAAGATATGATTTCCATGAAGAAAAGAAAAGACCTTGATTACAAATATGATGACAAAGAATTCGGAGATCCATCTTCCAACAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAATTTGTCAAAGCTGTGAATCAAATTGGATTTGACAAAGTTGGCCCCAAAAGAATTCTAGATCTGATGAATGTTCCTTGGCTGACAAGAGAAAATGTTGCCAGCCATTTGCAGAAATACCGGCTTTACTTGAGTAGGTTGCAGAAAGAAAATGATCAGAGATCTTCCTCAAGTGGGACGAAGCCTTCAGAGTTTCCTCCAAAAGACTCTGCAGGAAGTTTTGGATTATTCCAGAACGCAACAAACAGGCAGCAAAATGATGTTGCAGTTGACGGCTACAAATATTCAGATGTAACATTACAGAGTCATCCCTCTGAGACCAAGATTCACGGCCACAGCGATCTCAAGGCAATTGTTTCGGATTCCACAGCAGAAAAAAGAAGAGCTTTGTCTGGTGGAAGCACTCCTGATACAAAGGTAAGTTCCCAGATAAGTCTTAACCATTCTTCTTTTGGACCTCTTGAGTCAGAAGGAAGAAGGCATGCAGTATTCAATTGCACCATCCCATTAACAAAGTACACCTGGAGTGAAACTCCAGAAATTCCCTTCAAGAAAGAACACAAGTCATTTCTTCAATTAGAAGACAGCTTCAGTCAGTTACCTTTACACGTCATGCAGAACCCCCTTCAGGTTGACCAACCACATTCATTTGCTTCAGTTAGTTCCAACCCTTCTAACACAGAGGGAGAGATTGTTGCCTCTATTGAAACTAAGCCGATGTATGTTGATTGCAAAAGTGATTATGCCAGTCCTGTGAGTTCAATAGGAAGTGTAATGGACACATTTCCTACTCAGTCCAAGAGCCTTATGGAGAATGGTCAACTTTCAGAACGTACTTCCACTAAGAATTTGGACATGAAAACTCAGGGATTCAATCTAGGCTACAATTCTGACCCAGAATTTTACCCTGAGAACCTAATTTTGGAAGGCAAGGTGGATTCGTTACCACTGGACGAGGGCCTGCAATTCTATTATTGGCTGCAAGGTGAAGGCTATAATATGAACTGGGGATTGGAGAATATAGGAATGCCAGAGTATTATGATGATCCAGGTCTTGTTGCAGAACTTTAA 1701 0.4162 MDNGFSSPRRGAFPAGLRVLVVDDDPTWIRILEKMLKKCSYDVTTCGLAREALNLLRERKDRYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHETREFEGHEGFEGLHLMRNGSDQSEDGMSFAFEDMISMKKRKDLDYKYDDKEFGDPSSNKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQRSSSSGTKPSEFPPKDSAGSFGLFQNATNRQQNDVAVDGYKYSDVTLQSHPSETKIHGHSDLKAIVSDSTAEKRRALSGGSTPDTKVSSQISLNHSSFGPLESEGRRHAVFNCTIPLTKYTWSETPEIPFKKEHKSFLQLEDSFSQLPLHVMQNPLQVDQPHSFASVSSNPSNTEGEIVASIETKPMYVDCKSDYASPVSSIGSVMDTFPTQSKSLMENGQLSERTSTKNLDMKTQGFNLGYNSDPEFYPENLILEGKVDSLPLDEGLQFYYWLQGEGYNMNWGLENIGMPEYYDDPGLVAEL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1322 566 MobiDBLite consensus disorder prediction 331 353 - -
Lele21g1322 566 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 297 IPR045279 GO:0009736
Lele21g1322 566 MobiDBLite consensus disorder prediction 259 274 - -
Lele21g1322 566 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Lele21g1322 566 MobiDBLite consensus disorder prediction 258 285 - -
Lele21g1322 566 FunFam Two-component response regulator 195 258 - -
Lele21g1322 566 SUPERFAMILY Homeodomain-like 198 256 IPR009057 -
Lele21g1322 566 SUPERFAMILY CheY-like 16 141 IPR011006 -
Lele21g1322 566 CDD REC_typeB_ARR-like 19 133 - -
Lele21g1322 566 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Lele21g1322 566 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Lele21g1322 566 SMART REC_2 17 129 IPR001789 GO:0000160
Lele21g1322 566 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Lele21g1322 566 Gene3D - 17 169 - -
Lele21g1322 566 Gene3D - 195 258 - -
Lele21g1322 566 FunFam Two-component response regulator 17 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1322 Lele-ChrLele21 21595188 21599250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1322 13 265 Response Regulator Gene Family AT2G25180 55.469 9.09e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele21g1322 Response_reg 2.9e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1322 21 21595188 21599250 Lele21g1322 21 21595188 21599250 ECH
Lele21g1322 21 21595188 21599250 Lele23g0705 23 5530291 5534391 hybridization
Lele21g1322 21 21595188 21599250 Lele24g1278 24 18743044 18747262 hybridization