Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1293 ATGGATGCTGCTGAGGTTGAAGAAAATCTGTTTGCAGCCAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTATTATATATTGCAAAGTATCGTCAATATTTCCATCTTTAGAAGCAGCTAGGCCTAGGAGCAAAGCCGGTATTGAGGCTTTATGTTCATTGCATGTGGCCCTAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCGGATGCTGTTCTTCTAAAATCTGAGAAGGCTAAATCTGCTATTAAAGATGGCCTTGAGCAGGTGGAAGATATTGTTTCGCGATCTATTGCATGTCAGTGTCAGGAGATTGTGAGTGAACTCGATGGTGTAAAATTTGCACTTGACCCATTGGAGAAGCAAGCTGGTGCTGATTTAATTTCACTGCTTCAGCAAGGGAGACATTGTAGTGACTCTAGTGATGCCAACGAGCTCGAATGTTTTCACCAGTGTGCTATTAGACTTGGAATAACATCTTCAAGAGAAGCTCTTACAGAAAGAAGAGTTCTCAAAAAGCTCATTGAAAGAGCTAGGGCTGAGGAAGACAATCAGAAGGAATCAAAAGTTGCATATCTTCTACACCTGTTAAGGAAATATTCCAAGTTATTTAAGAGTGAAATTTCAGACGATAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCTCTACTCATGGATCTGTTGAGTGCAGTGTTTCTAATAGTCAATACCATGCCCTGGAAAGAGAGATTTCAAAACGCTGTTCCATTAAGTTAAATCCAATCAATAGGAAATCAGGGCGGATGCCTCTTCCACCTGAAGAGTTGAAGTGTCCAATATCTTTGCAGCTTATGTATGATCCTGTCATCATTGTTTCCGGTCAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGAGATGGACACAGCACTTGCCCCAAGACTCAACAAAAACTCGATCATCTTTTGTTAATTCCGAATTACTGTGTTAAGGGTCTTCTCATTATCTGGTGTGAACAGAATGGAGTTCCTGTTCCTTATGGCCCTCCTGAATCTTTTGATGTTAACTACTCGAGATTGGCTTTATCAGAGCCTGAATCAACAAATTCAAAATCTGTAAACAGTTTGAGCTCATGCAAGTTGAAGGGTGACAAAGTGGTTCCTTTAGCAGAGAGCAGTATCCCAGAGGAAGCGATAGTAGATAGAAACGAAGGTTTATCTGCGCAGGAGGAAGATACTAAGCAGTATCTCAGGTTTCAGAAAGTTCTGGTTGAAGAGACCAATTTCAAGACGAAGTGCAATGTGGTCGAAAAGTTAAGGATATTACTGAGGGATAACGAGGAAGCCAGAAATTTTATGGGATCTCATGGATTTGTTGAGGCACTTTTACAGTTTCTAAAGTCAGCTGTGTCTGAAGGGAATCTGAAAGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGCCGCCACTGCACTTTAGTAAAAGACATGACAATCGTTTCTGTAAATTCCTTGTTTCTTGATATGGAAATAAATTTCATGCTCATAAATAAGGCAAGAATGTTATCAGCAGGAGTCTTACCATTGCTGGAGGAAATTTCTAACTCAAGTTCATATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCCTGCCTTGAAGAAGGCAAAACAAAGATTGGGAAGACTCAGGCTGTCCATTTCCTAATCCGTCTCCTTCAAGCCGACACCGAAGTTCAATGCAAACAAGACTCTCTCCACGCACTCTATAATCTCTCCACTGTCGCTTCAAATATTCCAAACCTCCTTTCATCTGGGATCATCAATGGCCTTCTATCCCTTCTTTCAGAACCGGGTGATAATGATTATAGTATGTTTACAGAGAAATTCATTCCTGTTCTGATAAATTTGGCTGCTTCAAATTTGGGAAAAGAGGAAATAATCTCAACCCCAGGACTCATTAATGCACTGGCTAAGAAACTAGAATCGAGTGAACTCGTGGAGCAAGAACAAGCTGTGTCTTGTCTTTTAATATTGTGTAATGGGAATGAGCAATGTAGCCACAAGGTCCTACGCGAAGGTATAATACCTTCATTGGTTTTGATATCAGTAAATGGGACCCCAAGAGCGAAAGAAAAAGCTCAGAAACTTTTGATGCTCTTTAAAGAGCAGCGGCAACGAGATCCTTCGCCTGTTAAAACGAGTTTGTGTCCCCTCGTTGCTCCTGAACCTAAGAAGAATGTGGCTGTTGTTCCTCAGCCAGAAACAAAACCTGTGATGATTAAGTCAATGTCTAGAAGAATAATTGAGAAGCCTTTCAGATTTTTTCACAAAAGCAAGAGTTATTCTATTTACCATATATAG 2403 0.4087 MDAAEVEENLFAASDAKLHGEMCKALSIIYCKVSSIFPSLEAARPRSKAGIEALCSLHVALEKAKNVLQHCSECSKLYLAITADAVLLKSEKAKSAIKDGLEQVEDIVSRSIACQCQEIVSELDGVKFALDPLEKQAGADLISLLQQGRHCSDSSDANELECFHQCAIRLGITSSREALTERRVLKKLIERARAEEDNQKESKVAYLLHLLRKYSKLFKSEISDDNDSQGSAPCSPSTHGSVECSVSNSQYHALEREISKRCSIKLNPINRKSGRMPLPPEELKCPISLQLMYDPVIIVSGQTYERVCIEKWFRDGHSTCPKTQQKLDHLLLIPNYCVKGLLIIWCEQNGVPVPYGPPESFDVNYSRLALSEPESTNSKSVNSLSSCKLKGDKVVPLAESSIPEEAIVDRNEGLSAQEEDTKQYLRFQKVLVEETNFKTKCNVVEKLRILLRDNEEARNFMGSHGFVEALLQFLKSAVSEGNLKAQESGAMALFNLAVNNNSRHCTLVKDMTIVSVNSLFLDMEINFMLINKARMLSAGVLPLLEEISNSSSYGCATALYLNLSCLEEGKTKIGKTQAVHFLIRLLQADTEVQCKQDSLHALYNLSTVASNIPNLLSSGIINGLLSLLSEPGDNDYSMFTEKFIPVLINLAASNLGKEEIISTPGLINALAKKLESSELVEQEQAVSCLLILCNGNEQCSHKVLREGIIPSLVLISVNGTPRAKEKAQKLLMLFKEQRQRDPSPVKTSLCPLVAPEPKKNVAVVPQPETKPVMIKSMSRRIIEKPFRFFHKSKSYSIYHI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1293 800 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele21g1293 800 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele21g1293 800 Gene3D - 429 637 IPR011989 -
Lele21g1293 800 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele21g1293 800 PANTHER U BOX DOMAIN-CONTAINING 21 739 - -
Lele21g1293 800 SUPERFAMILY ARM repeat 429 736 IPR016024 -
Lele21g1293 800 CDD RING-Ubox_PUB 285 325 IPR045210 -
Lele21g1293 800 SUPERFAMILY RING/U-box 276 353 - -
Lele21g1293 800 SMART arm_5 454 498 IPR000225 GO:0005515
Lele21g1293 800 SMART arm_5 566 607 IPR000225 GO:0005515
Lele21g1293 800 MobiDBLite consensus disorder prediction 224 241 - -
Lele21g1293 800 Gene3D - 638 740 IPR011989 -
Lele21g1293 800 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele21g1293 800 Coils Coil 175 202 - -
Lele21g1293 800 MobiDBLite consensus disorder prediction 222 241 - -
Lele21g1293 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1293 Lele-ChrLele21 21041071 21044682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1293 1 799 U-box Gene Family AT1G24330 58.845 0.0 897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1293 21 21041071 21044682 Lele21g1293 21 21041071 21044682 ECH
Lele21g1293 21 21041071 21044682 Lele24g1236 24 16409480 16413145 hybridization