Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1278 ATGGGTTGCGTCAACACCACACTCTCTCCCCCTCGAAAACAGGACCATGGGTATGGTGGTCAAAGCTGGGCAGCCAAAAGCCCGAGTCGCGGCTATAATTATCAGAAGCCACTTTCTGATAGCAGGCCCCATCATAAGATTTCAACTTCAAGATCAATAGATAATGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTGAGAGATGAAGCGCGAGGAGAAAGGGCTGTTGCCGGAGTAGAGAACCACGAGGTTGGCAATGTTTCAAAGAGATTCGTGGACAAGAAGATTGGAAAAGATGTGTATGTGGGTGGTTGGCCTGAGTGGGTGGTTGATAATATTCCTGCAAATGTTCTGGCTGTCCTGGTCCCCAAGAGTGCTGATTGTTATGAAATGCTTGCCAAGATAGGGCGTGGAACATATAGCAACGTGTACAAAGCGAGAGAAAAGGCGACGGGAAAGATTGTTGCCATGAAGAAGGTTCGGTTTGACACATCTGATTCAGAAAGTATAAAGTTCATGGCGAGAGAAATCGTGATTCTGCAGAAGCTCGACCATCCCAATGTCATCAAGCTTGAAGGCATTGCCACCTCAAGGATGCAGTATAGTCTCTACCTAGTCTTTGATTACATGCAGTGTGACCTTACCCGAGTCATCACCCGCTCCGGCGAGAAACTCACTGAACCACAGATTAAGCGTTATATGCAGCAATTGCTTTCTGGACTTGAGCATTGCCATGAGAGGGGAGTGATGCACCGAGACATCAAAGCTTCAAACTTGTTAATAGACAAGAAAGGGGTTCTGAAAGTTGCAGATTTCGGCCTTGCAAATTCCTTCGATCTCAAACAAAAAGGGTCTTTCACCAATCGAGTGGTGACACTCTGGTATAGAGCTCCTGAATTACTTTTGGGCTCAACTGATTATGGATTCGCCATTGATCTCTGGAGTGCTGGATGCCTCTTGGCTGAGATGTTTTTCGGAAAGCCCGTCATGCCAGGCAGGACTGAGGTTGAACAACTTCACATGATCTTCAAACTATGTGGTTCTCCAACGGAGGATTACTGGAAGAAATTGAAGCTAGTCACAAGTTACAGGCCACCAAATTACAAACCTAATTATGATGAAACCTTCGGGGAGCTCCCTTCCTCTTCTCTTGGCCTCTTATCTACGCTTCTCGATCTTGATCCTAACTATCGTGGCACTGCTGCCTCCGCTCTCCAATCTGAATTCTTCAAGACTAGTCCTCTACCATGCCCTCTTTCAGCTCTACCAGTAATACACAAAGAGGAGGATGAGCGATCACATGCTAAAAGACGCAGAAAGCATAGGTCATCAAAGAAAGGACAAATACCCCGGCCAAGTAACATGACTCAGCCTGGAAAGAATAAAGTCGTGAGAAATTCAGAATATGAAATCATGTACCATGAACAGAGAAAGAAGGAAGAAGGAAGCATGTACGGGTTAGAAACGGGAAATACCACAGAAGAGAGCTTGAATAACACATCATTGACTCTGTCTCCAGTTTTTTTGTCAAGTGGTGATAAAAGATCTCCCAGGACTGAAGCACATCCTAATGCTCTCAAGAACGTCAAGAACTTTAGCATAAGCTACTGGCAGGCCATGAATGAATCGGCTCAATATCGTCGATCCTTTTCTGATTTTGATTATCGGTTTGATCCGGATAAGTTATCTAACCTCATTGAATTAAATAAGAGGTTAGGCAATCGAAATTGA 1734 0.4516 MGCVNTTLSPPRKQDHGYGGQSWAAKSPSRGYNYQKPLSDSRPHHKISTSRSIDNVGGGGGGGGGGVRDEARGERAVAGVENHEVGNVSKRFVDKKIGKDVYVGGWPEWVVDNIPANVLAVLVPKSADCYEMLAKIGRGTYSNVYKAREKATGKIVAMKKVRFDTSDSESIKFMAREIVILQKLDHPNVIKLEGIATSRMQYSLYLVFDYMQCDLTRVITRSGEKLTEPQIKRYMQQLLSGLEHCHERGVMHRDIKASNLLIDKKGVLKVADFGLANSFDLKQKGSFTNRVVTLWYRAPELLLGSTDYGFAIDLWSAGCLLAEMFFGKPVMPGRTEVEQLHMIFKLCGSPTEDYWKKLKLVTSYRPPNYKPNYDETFGELPSSSLGLLSTLLDLDPNYRGTAASALQSEFFKTSPLPCPLSALPVIHKEEDERSHAKRRRKHRSSKKGQIPRPSNMTQPGKNKVVRNSEYEIMYHEQRKKEEGSMYGLETGNTTEESLNNTSLTLSPVFLSSGDKRSPRTEAHPNALKNVKNFSISYWQAMNESAQYRRSFSDFDYRFDPDKLSNLIELNKRLGNRN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1278 577 MobiDBLite consensus disorder prediction 427 466 - -
Lele21g1278 577 SMART serkin_6 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1278 577 Pfam Protein kinase domain 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1278 577 PANTHER CELL DIVISION PROTEIN KINASE 128 417 - -
Lele21g1278 577 MobiDBLite consensus disorder prediction 449 464 - -
Lele21g1278 577 FunFam Putative serine/threonine-protein kinase 213 449 - -
Lele21g1278 577 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Lele21g1278 577 SUPERFAMILY Protein kinase-like (PK-like) 123 417 IPR011009 -
Lele21g1278 577 MobiDBLite consensus disorder prediction 1 77 - -
Lele21g1278 577 Gene3D Transferase(Phosphotransferase) domain 1 213 450 - -
Lele21g1278 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Lele21g1278 577 Gene3D Phosphorylase Kinase; domain 1 120 212 - -
Lele21g1278 577 ProSiteProfiles Protein kinase domain profile. 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g1278 577 FunFam probable serine/threonine-protein kinase At1g54610 117 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1278 Lele-ChrLele21 20731277 20733651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1278 125 453 Core Cell Cycle Gene Families AT5G10270 45.326 1.41e-96 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele21g1278 Pkinase 4.7e-72 CL0016