Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1269 ATGGATAGTGTTATTTTGGGTAAATCCTTACTTTGCTTACCGGTGGTTCAGTCAAAGCTTCAGCAATCACGAGCTCCTGTTGGATTTAGGAATTTGAGGATGGAAGCTAGAGTCACTGGTCGAGAATTCTGTTCACTTAGCTTTAAACGAAGGGGAGATTCTCTGGATTTGACAGTGGTTCACCTGGAATTTGCTCGAAGTCGTATCCAGTACATCCTGGAACCGTTTCTTGTTCACTTGTGTTGGTTACTGTTGTGGATGAGTTTGTTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTACTTTTGGCGCTGTGTTGCTGGATTTTTTCAGTCATATGCATGTACTGGTTCAACAACGGTGGAATTATGGAAACCAAGGTTAGTTTTCTTGGTGGTGGCGCCGGTAAGATGCGGCTCAAGTGGTGGGAGAAGATCTCTGGCAATAGTTGTAAGATTCATCAACACTACTACCCATGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAACCTTTTACTGACATGGGTACTGGGCTGGACCATTGTATCTTTGTGGATCTTTTGCTTCATGACCTTTCAAGCTACTGAGAAGAGGAAAGAGACTCTGGCAAGTATGTGTGATGAAAGGGCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCAATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACGTTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACTAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCAACAAGGTTGGACCATTAAGAGGATGGATACCCTTGAGCAAAACCCTATTCATGAGGATGACTATGCTCCTGAGGCACTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCATTTTTGCGCAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATAGTGAAAATGTCTTGCGGGCTAGAGAGTTAGGGAAAGGAGTTGTAACGGCTCCTTTTAGGCTGCTCAAAACAAATCATCTAGGAGTTATCCTCACTTTCGCAGTCTACAACACAGATCTTCCATCAAATGCAACCCCGAATGAAAGGATTCAAGCGACAAATGGGTATCTTGGTGGCGTCTTTGATATTGAGTCATTGGTTGAAAAATTACTTCAACAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATACTATCATGGTAGCTCCCTGAACTTCGGAGATCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATTGGAATCCTTGTTATTGCGCTCCTTGTAGGGCATATTTTTCATGCTACTGTGAATCGAATTGCTAAAGTGGAGGAAGATTACCGTGAGATGATGGAACTTAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCAATGAATGGTGTCCTTGGAATGTTGCATATGCTTATGGACACAGATCTAGATGTAACACAGAAAGAATATATCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATCTGGTAAGCTTGAGCTTGAGGCAGTGCTATTTGACATACGAGCAATTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTAGCAGTTTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGTGATCCAGGAAGGTTTCGGCAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGATAAAGGGCACATATTTGTCACTGTCCATCTTATTGAAGAAATTGTCAATTCAATTGAAGTTGCAACATCGAAGGATACCTTGAGTGGCTTTCCTGTTGCTGACAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTCGGTCAAGAGGGACCTCTGGGTTCTTTCTCATCTTCCTCCTCTGATCGCATTACACTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTGTAGAAGCCCAATCCCGAATCTTCACTCCATTCATGCAGGTTGGTCCGTCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGCAGACCAAAGATTGGATCTACGTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGAGGGTAAAACTCAGCAAATTAGCAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGACTGCACTTGTTATAGACCCTAGACCTGTCAGAGCTAAAGTGTTGAGATATCACATTAAACGGCTTGGCATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTACAATAAGCAATGGGGATATAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGAGATTCCGGTGTTTCATCTCAGTTCATCAATAACATGAGGAAAATTGATTGCGAGGTTCCTCCAAAGCTGTTTGTTCTTGTTAATTCTGGTAGCTCTTCTAGAACAAGTTCCGTAACATTGGATGTTCATAATCCAACTTTCATTGTAAAACCTCTCAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGTGTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTTCGCCATCTTTTGCGTGGGAGAAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTAGCAGCTGGAGCTTTAAAAAAGTACGGAGCTGATGTGGTCTGTGTTAACAGTGGAAAAGATGCCATTGCTATGCTGAAGCCGCCTCATCAATTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATAGAACACCATGTCAACATAGGAGAAGTGCCTGTGGAAACCTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTAATTCAGGCAACACATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATCGGGAAGTTTCACGGTTTTTCCAATCAACTTCATGA 3348 0.4286 MDSVILGKSLLCLPVVQSKLQQSRAPVGFRNLRMEARVTGREFCSLSFKRRGDSLDLTVVHLEFARSRIQYILEPFLVHLCWLLLWMSLFYVVGFGLKLGHLLLALCCWIFSVICMYWFNNGGIMETKVSFLGGGAGKMRLKWWEKISGNSCKIHQHYYPCIGSKKVRRTLWRNLLLTWVLGWTIVSLWIFCFMTFQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDSENVLRARELGKGVVTAPFRLLKTNHLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGYYHGSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGHIFHATVNRIAKVEEDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYIRTAQGSGKALVSLINEVLDQAKIESGKLELEAVLFDIRAILDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEIVNSIEVATSKDTLSGFPVADRCQSWKGFSSVGQEGPLGSFSSSSSDRITLIVSVEDTGEGIPVEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSRPKIGSTFTFTAVFTNESPSSTEGKTQQISNQPNLASSEFQGMTALVIDPRPVRAKVLRYHIKRLGIHVEIASDLNQGLSTISNGDIVINMILVEHEVWDRDSGVSSQFINNMRKIDCEVPPKLFVLVNSGSSSRTSSVTLDVHNPTFIVKPLRASMLAATLQRAMGVGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGKDAIAMLKPPHQFDACFMDIQMPEMDGFEATRRIREIEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFQSTS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1269 1115 Gene3D - 972 1114 - -
Lele21g1269 1115 SUPERFAMILY CheY-like 974 1111 IPR011006 -
Lele21g1269 1115 Gene3D - 194 246 - -
Lele21g1269 1115 FunFam Histidine kinase 4 502 593 - -
Lele21g1269 1115 Pfam Response regulator receiver domain 979 1106 IPR001789 GO:0000160
Lele21g1269 1115 SMART CHASE_2 243 444 IPR006189 -
Lele21g1269 1115 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 584 797 IPR036890 -
Lele21g1269 1115 FunFam Histidine kinase 4 247 476 - -
Lele21g1269 1115 Coils Coil 507 527 - -
Lele21g1269 1115 CDD HisKA 530 591 IPR003661 GO:0000155|GO:0007165
Lele21g1269 1115 CDD PRTases_typeI 928 1006 IPR000836 -
Lele21g1269 1115 Gene3D - 819 954 - -
Lele21g1269 1115 ProSiteProfiles Histidine kinase domain profile. 537 802 IPR005467 -
Lele21g1269 1115 SMART REC_2 977 1107 IPR001789 GO:0000160
Lele21g1269 1115 SMART HisKA_10 530 595 IPR003661 GO:0000155|GO:0007165
Lele21g1269 1115 Gene3D - 594 804 IPR036890 -
Lele21g1269 1115 PANTHER TWO-COMPONENT HISTIDINE KINASE 206 1104 - -
Lele21g1269 1115 ProSiteProfiles Response regulatory domain profile. 830 952 IPR001789 GO:0000160
Lele21g1269 1115 CDD HATPase_EvgS-ArcB-TorS-like 647 800 - -
Lele21g1269 1115 Pfam CHASE domain 246 442 IPR006189 -
Lele21g1269 1115 Pfam His Kinase A (phospho-acceptor) domain 530 595 IPR003661 GO:0000155|GO:0007165
Lele21g1269 1115 SMART HKATPase_4 642 802 IPR003594 -
Lele21g1269 1115 CDD REC_hyHK_CKI1_RcsC-like 979 1107 - -
Lele21g1269 1115 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 642 800 IPR003594 -
Lele21g1269 1115 SUPERFAMILY CheY-like 825 953 IPR011006 -
Lele21g1269 1115 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 515 596 IPR036097 GO:0000155|GO:0007165
Lele21g1269 1115 ProSiteProfiles CHASE domain profile. 243 469 IPR006189 -
Lele21g1269 1115 Gene3D - 498 593 - -
Lele21g1269 1115 ProSiteProfiles Response regulatory domain profile. 978 1111 IPR001789 GO:0000160
Lele21g1269 1115 Gene3D CHASE domain 247 476 IPR042240 -
Lele21g1269 1115 PRINTS Bacterial sensor protein C-terminal signature 727 741 IPR004358 GO:0016310|GO:0016772
Lele21g1269 1115 PRINTS Bacterial sensor protein C-terminal signature 762 780 IPR004358 GO:0016310|GO:0016772
Lele21g1269 1115 PRINTS Bacterial sensor protein C-terminal signature 786 799 IPR004358 GO:0016310|GO:0016772
Lele21g1269 1115 PRINTS Bacterial sensor protein C-terminal signature 745 755 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1269 Lele-ChrLele21 20502775 20508677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1269 87 1115 Miscellaneous Gene Families AT1G27320 68.130 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele21g1269 CHASE 1.6e-36 CL0165