Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1151 ATGGCATGGTCTAATGGTGGTAACTTATCGGCCCAGAAGTCGGTTCGCCCGACTCGGTCTTGCTACGTTCCTCCTCATTGCAGGAACATTGGCATGCCTGGTTTCAACAATGTGAATTCATTCACGTCTGCAAATGGGTCAGCTCAGTATGGTTTCAACAATTCCAGACAACAAGCCTGGGGTGGTGCGAGTTACGGTCGTGGTCGTGGTCGCGGTCGCGGTCGCGGTCGCGGTAGAGGCCGGAGGTTTGATCGACCGTATGAGACTGAGGAGCCGAACCTTTACCCGAATCGAAACGGTTTGGGGATTCCTGGCGCGCTTGAGACTACGGAGAGTTTCGGAGAAGATGCCGATGACTGTGGTGGTATCAATTTTGACGCATATGAAGATATTCCAGTGGAGGTCAGTGGTTCCAACGTACATCCACCGGTCAATACCTTCGCAGAAATAGAGTTGAATGAGGGTTTGAGCAAGAATATCAAGCGATGCAAGTACGTTAAGCCCACTCCGATTCAGCGTCATGCGATTCCTATCGCCATTGCTGGTCGCGACTTGATGGCTTGTGCTCAGACTGGGTCGGGGAAGACGGCGGCGTTCTGTTTCCCCATTATATCTGGGGTTTTGAAAGATCTTTCTAGGTTTTTGCCTACGGCTCGTGAAGGCTGGACTGCGTATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTATCATGCCAGATTCATGATGAGGCCACGAAGTTCGCTTATCAGACCGGAGTGAAGATCGTTGCTGCTTATGGTGGGGCACCGATTTTTCAGCAGCTTCGTAATTTAGAAAAAGGAGTGGACATCTTAGTTGCAACTCCTGGGCGCCTAGTTGATTTGATTGAGAGAGGTAGGGTTTCACTCGCACGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACAATGCTCTTCAGTGCTACGTTCCCAGATGATATACAGAAGCTTGCGGCTGATTTTCTTTCAAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCTAGCACTGAATTGATTGTACAAAAAGTTGAACTCGTTCAGGATATGGACAAAAGAAACCATCTCGTGGATCTTCTCCGTTCTCAAAGGGTAAATGGGTTTAATGGAAAGCGTGCTTTGACTCTAGTATTTGTTGAAACTAAAAGAGGAGCAGATGCCTTGGAAAATTGGCTGTCGAGAAAAGGTTTTCCGGCTATTGCAATACATGGGGACAAAGTTCAAATGGAGAGGGAAAGAGCCTTGAGTTCTTTCAAAAGTGGTGCTACTCCTATTTTGGTCGCGACTGATGTTGCTTCAAGAGGTTTAGACATACCGCACGTGGCTCATGTTGTCAATTTCGACTTGCCAAAAGATATAGATGGCTATGTTCACAGAATTGGCAGAACTGGTCGGGCCGGCAAGTCTGGTTTGGCCACTGCTTTCTTCAGTGATCAAAACATCCCTCTTGCAAAGCCCCTTGCTGAACTCATGCAAGAAGCAAACCAAAAGGTTCCCTCTTGGCTCACCCAATATGCAACAGAGAGTTCTTCATATGGCTTCCGTAGCAGCAGCAACAGAAGGCGGCCGTGGTCTGGTAATGGCAAGTATGGCGGCCATGACTTTAGAAACATGACTCAACATGAAGAAGGGTATAACAACCCCTATGAGGATCCAGGTTTTGCTGAGAACAACTGTGGCACTATCGCTACAGCTTTTGAAATCTCTAATTCTGCCAATGATTCTCATGATATAGCAAATACAGTTCCTCCTACTAGCAGCAATTACCATTACAACGATGCTGCTGACGCTTATTATGGAAGCGGGAGAGCCGATGGGCCAAACGGATATGCATCTGTTGTTCCTACTGGATGGGACTAG 1962 0.4745 MAWSNGGNLSAQKSVRPTRSCYVPPHCRNIGMPGFNNVNSFTSANGSAQYGFNNSRQQAWGGASYGRGRGRGRGRGRGRGRRFDRPYETEEPNLYPNRNGLGIPGALETTESFGEDADDCGGINFDAYEDIPVEVSGSNVHPPVNTFAEIELNEGLSKNIKRCKYVKPTPIQRHAIPIAIAGRDLMACAQTGSGKTAAFCFPIISGVLKDLSRFLPTAREGWTAYPTALIMSPTRELSCQIHDEATKFAYQTGVKIVAAYGGAPIFQQLRNLEKGVDILVATPGRLVDLIERGRVSLARIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPDDIQKLAADFLSNYIFLAIGRVGSSTELIVQKVELVQDMDKRNHLVDLLRSQRVNGFNGKRALTLVFVETKRGADALENWLSRKGFPAIAIHGDKVQMERERALSSFKSGATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSDQNIPLAKPLAELMQEANQKVPSWLTQYATESSSYGFRSSSNRRRPWSGNGKYGGHDFRNMTQHEEGYNNPYEDPGFAENNCGTIATAFEISNSANDSHDIANTVPPTSSNYHYNDAADAYYGSGRADGPNGYASVVPTGWD 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1151 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 517 IPR027417 -
Lele21g1151 653 CDD SF2_C_DEAD 374 510 - -
Lele21g1151 653 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 540 IPR001650 -
Lele21g1151 653 SMART helicmild6 420 501 IPR001650 -
Lele21g1151 653 FunFam ATP-dependent RNA helicase RhlB 365 544 - -
Lele21g1151 653 CDD DEADc_DDX3_DDX4 146 368 IPR044763 GO:0003724|GO:0005524
Lele21g1151 653 SMART ultradead3 164 377 IPR014001 -
Lele21g1151 653 FunFam Probable ATP-dependent RNA helicase DDX4 108 364 - -
Lele21g1151 653 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Lele21g1151 653 Pfam DEAD/DEAH box helicase 169 351 IPR011545 GO:0003676|GO:0005524
Lele21g1151 653 Pfam Helicase conserved C-terminal domain 386 501 IPR001650 -
Lele21g1151 653 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 362 IPR014001 -
Lele21g1151 653 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 125 540 - -
Lele21g1151 653 Gene3D - 108 364 IPR027417 -
Lele21g1151 653 Gene3D - 365 544 IPR027417 -
Lele21g1151 653 MobiDBLite consensus disorder prediction 58 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1151 Lele-ChrLele21 8973217 8977020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1151 143 533 Eukaryotic Initiation Factors Gene Family AT3G19760 31.378 1.11e-58 201