Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1143 ATGGACGAGGATTTGCTTAAGCAAAACACCGATTGCGTCTATTTCTTGGCTTCACCTCTCACTTGCAAGAAGGGGGCTGATTGTGAGTATCGGCATAATGAAATTGCAAGGCTAAACCCAAGGGATTGTTGGTACTGGTTATCTGGGAAGTGCCTTAATCCAACATGTGCTTTTAGACATCCTCCATTGGAAGGACATACTGGAGTGCCATCTGAGCCTACACAATCTTCTTTACCTGCAAACAAGACAGTTCCCTGTTATTTTTACTTCCATGGATTTTGCAATAAAGGCGAGAGATGCGCATTTTTGCATGGGCCTGATTTTAGCTCTTTTCCTGGTAAGCCTGGGATGAATGCCTCTGGAAGCAATGATGCCCTGCCGCCAGAAAATAAAACATCACCCGGAAATAAAGCAAGTGTAGCAATTACAACTGAGACACATCCTGATCCAACTGAAATTGCCCCAAAGGCTCTGGATAATTGTAAATTTGACCTTGTTGAGGATCCTCAGCAATCAGTACTAAAAAATGTTAAACCGCAAAATACTTTGCCATACATATCTGCTTATGAAAATAAAGAAGCCCCTGTAATTTGGCCAGACTCTGTATATCCAGAGAAGGACTTTGTTCATAGCATTTCCTATATATCCACTGATCGTAGTACAGGCGAGCAAGTGCATAGTCACATGGAACCTGAGGAACGATTGGAATTGTCCCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGGACCGGGCCTTTGGGGATGATTCTGAATATTTACCAGTTGATAGGGAACACAGGGAATTGAATGGACAGTACTTGCAGTATGAATTTAAAGACACCGTTGAGTATGATCCCGAATGCCCTGAAGCTGACATTTTGTATGAAGAGATGTACGATGGTTGCAGATTTATGGATGGTGATCATATTCTTGCTAATGACAGAAGAGTTCCTGCTTTTTCCAGAGAGAGAATCATAGACTCTATATTGTCCAGTAAGAGGATCCGAATGCCACCTAAAATGACTGCTTGTGGCAGGAAATTAGATCTACGAGACCATCTGAGGAGACGAAGGGAATTTAATGATCGACTGGTTACAGGCTTTTCAAGAAGACGTGAATCATCTTGTCTGGTGATTCAGAACCGAGAAAGGTTTCGAAGACATGGTTTTGATCCGCGGCTTAGTAGAAGGTTGACGTCTGAGGTGGGATTCAACACTTTAGACTCAAATGGAGAGTTTGAAACTCGTTCAATTTCTAATAGTCACAGTTTTTTTAGGCACCCTCTGCAACATTCACCAAGGAAGCTGCAGCATTATAGAGAAAACCGGGGTAAACAGCAGTTTCTACCTAAAATATTCCGGAAACCATTTTCAAAGAGAAGGAGATATACTCCTGTGTCTACCGACGCCGCATTTCACGGACCTAAGACCCTAGCAGAAATCAAAGAAGAGAAGGCGTCGGCTGCAGAAAGAGGGCATTTCGATAGTACTTTAGCTGACTTCCAGGATCCCAAACCTCTAAGTGAAATCCTCAAGAACAAGAAGAGGTTGGATTGTGAATGA 1566 0.4259 MDEDLLKQNTDCVYFLASPLTCKKGADCEYRHNEIARLNPRDCWYWLSGKCLNPTCAFRHPPLEGHTGVPSEPTQSSLPANKTVPCYFYFHGFCNKGERCAFLHGPDFSSFPGKPGMNASGSNDALPPENKTSPGNKASVAITTETHPDPTEIAPKALDNCKFDLVEDPQQSVLKNVKPQNTLPYISAYENKEAPVIWPDSVYPEKDFVHSISYISTDRSTGEQVHSHMEPEERLELSPGFDVLVDDEMEDRAFGDDSEYLPVDREHRELNGQYLQYEFKDTVEYDPECPEADILYEEMYDGCRFMDGDHILANDRRVPAFSRERIIDSILSSKRIRMPPKMTACGRKLDLRDHLRRRREFNDRLVTGFSRRRESSCLVIQNRERFRRHGFDPRLSRRLTSEVGFNTLDSNGEFETRSISNSHSFFRHPLQHSPRKLQHYRENRGKQQFLPKIFRKPFSKRRRYTPVSTDAAFHGPKTLAEIKEEKASAAERGHFDSTLADFQDPKPLSEILKNKKRLDCE 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1143 521 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Lele21g1143 521 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Lele21g1143 521 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Lele21g1143 521 SMART c3hfinal6 80 106 IPR000571 GO:0046872
Lele21g1143 521 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Lele21g1143 521 Gene3D - 3 64 - -
Lele21g1143 521 Gene3D - 72 167 - -
Lele21g1143 521 SUPERFAMILY CCCH zinc finger 80 107 IPR036855 GO:0046872
Lele21g1143 521 MobiDBLite consensus disorder prediction 114 136 - -
Lele21g1143 521 Pfam Zinc-finger containing family 7 63 IPR041686 -
Lele21g1143 521 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Lele21g1143 521 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 520 - -
Lele21g1143 521 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1143 Lele-ChrLele21 8869056 8872111 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele21g1143 zf-CCCH_3 1.1e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1143 21 8869056 8872111 Lele21g1143 21 8869056 8872111 ECH
Lele21g1143 21 8869056 8872111 Lele23g0903 23 14376396 14379444 hybridization
Lele21g1143 21 8869056 8872111 Lele24g1119 24 8956347 8959837 hybridization