LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1120	ATGGATCACAAGACCACCTTTGACTCCGACATTGTTCTTGTAGAATCAATCCGGAGCTACCTGCTTGATGACCAATCCGATGCTCTCATTGCTTTTCCGGCCACATTCGCCGGAGAAGCTCCGGTCTTCCTACAGAGTTCTAGCTCCGGGATGACGGAGAACAGCGACGGTGACATTAGTTCTCCATCTTTCTCATCCGAACAAAGAGCAAACACTTCCACGGTGGGGGAGATTTGTAGTAGTGCAGATGCGGCAGTGCGTGGCGTTCACGCGCCGTCGAGTGGGAGAGGTTACAGGGGAGTAAGGCGGAGGCCGTGGGGGACATACGCTGCGGAGATTAGAGATCCGAAGAAGAACGGCGCGAGAGTGTGGCTTGGGACTTATGAGACGGCTGAGGATGCCGCTTTGGCTTATGATCAAACCGCTTTCAAGATGCGCGGTTCCAAAGCCAAGCTGAATTTTCCCCATCTTATTGGCTCAAATATGACGGAGCCACCAAGAGTGACCGGAAAGCGGCGGTTGCAGGAGCCTTGTGAGCAGGAGGCATTGACGGAGGTAAAGAAGAGAGAGAAGAGCCGAGTGAACATGTTCGTGTGGGGTACATGTGAGCTAAACAATGAATCGAAGCCAAGCTGTGGAGTAGCCGATGGCTTCTGTTGA	660	0.5303	MDHKTTFDSDIVLVESIRSYLLDDQSDALIAFPATFAGEAPVFLQSSSSGMTENSDGDISSPSFSSEQRANTSTVGEICSSADAAVRGVHAPSSGRGYRGVRRRPWGTYAAEIRDPKKNGARVWLGTYETAEDAALAYDQTAFKMRGSKAKLNFPHLIGSNMTEPPRVTGKRRLQEPCEQEALTEVKKREKSRVNMFVWGTCELNNESKPSCGVADGFC	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1120	219	Gene3D	AP2/ERF domain	97	156	IPR036955	GO:0003700\|GO:0006355
	Lele21g1120	219	PANTHER	DNA-BINDING DOMAIN	70	179	IPR044808	GO:0003700\|GO:0009873
	Lele21g1120	219	SUPERFAMILY	DNA-binding domain	97	156	IPR016177	GO:0003677
	Lele21g1120	219	ProSiteProfiles	AP2/ERF domain profile.	97	155	IPR001471	GO:0003700\|GO:0006355
	Lele21g1120	219	FunFam	Ethylene-responsive transcription factor 2	96	156	-	-
	Lele21g1120	219	SMART	rav1_2	97	161	IPR001471	GO:0003700\|GO:0006355
	Lele21g1120	219	PRINTS	Ethylene responsive element binding protein signature	98	109	IPR001471	GO:0003700\|GO:0006355
	Lele21g1120	219	PRINTS	Ethylene responsive element binding protein signature	121	137	IPR001471	GO:0003700\|GO:0006355
	Lele21g1120	219	MobiDBLite	consensus disorder prediction	47	71	-	-
	Lele21g1120	219	CDD	AP2	105	157	IPR001471	GO:0003700\|GO:0006355
	Lele21g1120	219	Pfam	AP2 domain	97	147	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1120	Lele-ChrLele21	8424197	8424856	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1120	88	190	AP2-EREBP Transcription Factor Family	AT2G44840	69.231	7.69e-46	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele21g1120		AP2	2e-14	CL0081