Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1107 ATGGGGAAGAAAAAGGAACAAGTGGGAGATAGATCAAGTGATGATGGCGGGAATCAAAGCAAAGCTGGAGATAGTAGCCCCAAAGCATATGATAAGGATACCATGGTGTTCATATCCATGGCTCAGGAGTTAAAGGATGAGGGGAACAAGCTATTCCAAAAGAGGGACAATGAAGGAGCCTTGATAAAATATGAGAAAGCTCTCAAGTTGCTTCCGAAAAATCATATAGATGTTTCATATCTACGGAGTAACATGGCAGCATGCTACATGCAGATGGGACTTCGTGAGTACCCCAGGGCAATTCATGAATGCAATTTAGCCCTTGAGGTTACACCGAAATACAGTAAGGCACTGTTGAAGAGGGCAAGGTGCTATGAAGGTTTAAATAGACTGGATTTAGCTCTGAGAGATGTTAGTACCATTTTGAAGATGGAACCAAATAATATCATGGCATTGGAGATTTCTGAAAGGGTTAAAAAGTCACTTGAGGAGAAGGGATTAAGAGTGAATGATACAGTGATTGAGTTACCTCCCGATTACGTTGAACCCTCTTATGCTTTGCCTCCAGAAAAAGCAGCGAAAGAGAAGACACGCAAGAAGAAGAGCAACAAAGTTGAGGTGAAGACCATTGATAATAAAACTGTAGAAAAACAAGATGAGGAGAAATTGGAAGAGAAGAAGGTTGAGGACAATATTGAGAAGGCTGGGAAGAAATCTAAAAGGAAGGCCAAGGAAAAAATTGATGAGAAGAAGGCCGATGTTAAGGAGGTTGTGGAGGAAACAATTAATGGTAGAAGAGATGATATGCCTAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGACATAAGATGGTCTGAATTGCCTATTAATTGCAGCCTTTTGCAGTTAAGAGAAGTTATCTGTGACCGTTTCCCAAGTCTAGGAGCAGTTCTTGTCAAGTACAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATTCTGAATTAAGATGGGCCGAAACTTCAGCAGGATCACAAGGTTCAATCCGGCTGTACATTGTTGAAGCTACCCCTGAGCAGGATCCATTCTTCCAGAAACTTAATAAAATGGAGGTGCAAAAGTGTCCTATCAGTAAAGCACCAGAGAATGGATGCGTGTTGAAAGAAAAGGATGTGATAAACTCATCTTGTGTTGAGGATTGGACAATCCAGTTTGCCCAGCTATTCAAAAACCATGTTGGATTTGAATCTGATAGATATTTGAATTTTCATGAGCTTGGGATGAAGCTCTATTCTGAGGCTATGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCTTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACAGCTCTAGCGTTGTTCAACTGGGGAAATGTTCACATGTCTAGGGCAAGGAAGAAAGTGTATTTTGCTGAAGATTCTTCTAAGAAGCACATAGATGAACAAATCAAAAGTGCATATGACTGGGCACAGAAAGAATATAAAAAAGCAGGAGAAAAATATGAAGCAGCCATTCAAATGAAATCAGATTTTTATGAAGGCTTTCTGGCGCTGGGGCAACAAAAATTTGAGCAAGCAAAACTTTCTTGGTATTATAATGCAATCAACAGTGGTGCTGATTCATCGACATGGCCCTCTGCTCATGTTCTTCAGCTTTACAACTATGCTGAAGATAATATGGAAAAAGGAATGCAGTTATTGGAACAGTCAGAGGAGCATCGCTTTATTGAAACCTCCAAATCCAAGGATGTCAAATTACTTTTACATGACATGGGGTTGGATGGAATGTTTAAAAATCTATCAGCAGATGAAATTGCTGCACAGGCTGCAACTATGATATCTCAAATAAATCTGCTGTGGGGTACCATGCTATATGAGCGTTCAATTGTGGAATTCAAAGTTGGGTTACCAGTATGGCATGAATCTCTGGAAGTAGCTGTTGAGAAGTTTAAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTGATGTTGAAGAACCACTGCTCAAATAATACTGCTGCAGATGGTCTAGAATTCAAAATTGATGAAATAGTTCAAGCATGGAATGAGATGTATGAAGCTAAAAAGTGTCAGCTTGGAGTTCCTTCATTTCGCTTGGAAACCTTATTTAGGAGGCGAGTTTCAAAAATTTATCATGCCTTTGAGCTTGTGTGA 2187 0.401 MGKKKEQVGDRSSDDGGNQSKAGDSSPKAYDKDTMVFISMAQELKDEGNKLFQKRDNEGALIKYEKALKLLPKNHIDVSYLRSNMAACYMQMGLREYPRAIHECNLALEVTPKYSKALLKRARCYEGLNRLDLALRDVSTILKMEPNNIMALEISERVKKSLEEKGLRVNDTVIELPPDYVEPSYALPPEKAAKEKTRKKKSNKVEVKTIDNKTVEKQDEEKLEEKKVEDNIEKAGKKSKRKAKEKIDEKKADVKEVVEETINGRRDDMPKKAAKLVFGEDIRWSELPINCSLLQLREVICDRFPSLGAVLVKYRDQEGDLVTITSDSELRWAETSAGSQGSIRLYIVEATPEQDPFFQKLNKMEVQKCPISKAPENGCVLKEKDVINSSCVEDWTIQFAQLFKNHVGFESDRYLNFHELGMKLYSEAMEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFAEDSSKKHIDEQIKSAYDWAQKEYKKAGEKYEAAIQMKSDFYEGFLALGQQKFEQAKLSWYYNAINSGADSSTWPSAHVLQLYNYAEDNMEKGMQLLEQSEEHRFIETSKSKDVKLLLHDMGLDGMFKNLSADEIAAQAATMISQINLLWGTMLYERSIVEFKVGLPVWHESLEVAVEKFKLAGASPTDIAVMLKNHCSNNTAADGLEFKIDEIVQAWNEMYEAKKCQLGVPSFRLETLFRRRVSKIYHAFELV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1107 728 SMART tpr_5 115 148 IPR019734 GO:0005515
Lele21g1107 728 SMART tpr_5 79 114 IPR019734 GO:0005515
Lele21g1107 728 SMART tpr_5 41 74 IPR019734 GO:0005515
Lele21g1107 728 MobiDBLite consensus disorder prediction 1 30 - -
Lele21g1107 728 Gene3D Tetratricopeptide repeat domain 38 169 IPR011990 GO:0005515
Lele21g1107 728 SMART PB1_new 271 350 IPR000270 GO:0005515
Lele21g1107 728 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Lele21g1107 728 Pfam PB1 domain 275 349 IPR000270 GO:0005515
Lele21g1107 728 SUPERFAMILY CAD & PB1 domains 274 359 - -
Lele21g1107 728 PANTHER PROTEIN CLMP1 3 726 IPR044517 -
Lele21g1107 728 ProSiteProfiles PB1 domain profile. 271 350 IPR000270 GO:0005515
Lele21g1107 728 CDD PB1 279 347 - -
Lele21g1107 728 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Lele21g1107 728 Gene3D - 267 350 - -
Lele21g1107 728 SUPERFAMILY TPR-like 38 158 IPR011990 GO:0005515
Lele21g1107 728 Coils Coil 240 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1107 Lele-ChrLele21 8120018 8122277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1107 24 164 Calmodulin-binding Proteins AT3G25230 30.968 1.35e-08 56.2