Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1088 ATGGCTGGTATGCTTCCTGGAGTCGAATCTGCTAGAAGGAGACGCGTCCATCAGAGCGGGGCTTCATCTGATTGCCCTTATTTCACCAGACGATCTTCCCTCTGTTTATATTCCAGCAAACATGAATTCCTTCATTCCTCCTCTTCTCTGCAGCAAAGAAGCGTATTATACCAGGCGCACACAGATGAGAAGCTCGCCGGAGCAGCCGGAGAAGCCAAAGAAAGATTGAATGAGAGATTAAGATCGGCCGAAATGAAATCATCTAACAAAAGGCAAAACGTTAAAGAGAAGAAGAAAAGCAGAGAAGGAAGAGCAGAGCTACAGATAGAGGTATACGGATCAAAGAAAAGTGGTCGGTCAAGGATGATGTTCAATTGGAGGAAATTGAGCTGGAAGGCTTCAGATCAAGAGGATTGTGCTGTGTGCTTGGAGTCATTCCAGGTTGGGGAAACACTGATCCATCTTCCTTGTGCTCACAGGTTTCATTGCAACTGCTTGGAGCCATGGCTACAAAATAATAGTTATTGCCCATGTTGCAGAACTTCCATTATTATCTCTCACTAG 564 0.4504 MAGMLPGVESARRRRVHQSGASSDCPYFTRRSSLCLYSSKHEFLHSSSSLQQRSVLYQAHTDEKLAGAAGEAKERLNERLRSAEMKSSNKRQNVKEKKKSREGRAELQIEVYGSKKSGRSRMMFNWRKLSWKASDQEDCAVCLESFQVGETLIHLPCAHRFHCNCLEPWLQNNSYCPCCRTSIIISH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1088 187 CDD RING-H2_PA-TM-RING 138 180 - -
Lele21g1088 187 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Lele21g1088 187 MobiDBLite consensus disorder prediction 1 23 - -
Lele21g1088 187 Pfam Ring finger domain 138 180 IPR001841 -
Lele21g1088 187 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 52 181 - -
Lele21g1088 187 SMART ring_2 139 179 IPR001841 -
Lele21g1088 187 SUPERFAMILY RING/U-box 127 185 - -
Lele21g1088 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 185 IPR013083 -
Lele21g1088 187 Coils Coil 73 93 - -
Lele21g1088 187 MobiDBLite consensus disorder prediction 80 102 - -
Lele21g1088 187 FunFam Zinc finger family protein 111 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1088 Lele-ChrLele21 7917646 7918991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1088 1 81 C3H Transcription Factor Family AT2G15580 48.421 2.32e-17 72.4