Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0990 ATGGCCGCCGCAGGTTCATCCTCGCCCTCTTCAGTTAACACCATTTCCGGCAATGTGAATGCTTCTTCTTCGGCGGCAGACGCCGCAGCTCCTTCTGCTTCCTCTGCCATTGATTTCCTCTCTATATGTCACAGCCTAAAGACAACAAAAAGAGCAGGATGGATACGTAAACATGTTAAGGATCCAGAATCGATAGGGGATCATATGTATCGAATGGGTTTGATGGCTCTGATTGCTTCAGATATCTCTGGCATAGACCGAAACAAGTGTATAAAAATGGCTATTGTTCACAATATTGCTGAAGCTATTGTTGGGGACATTACCCCATCAGACGGTGTTTCAAAAGAAGAAAAGAGTAGACGAGAACGAGAAGCACTTGATCATATGTGTAAAGTGCTAGGTGGAGGATCTAGAGCAACGGAAATAGCTGAGTTGTGGATGGAGTATGAAGCAAATTCTTCACCAGAAGCTAAATTTGTCAAGGACCTTGACAAGGTGGAGATGATACTTCAAGCCTTAGAATATGAAGATGGTGAGTGCTTGTTTCCTCTTTCTCTAATTCTTTATTCACTATACTGTGTTATGGCTTCTAAAACTCTGATACGTATGTACACATATCAGCAGAAGGATTTGGATGAATTTTTTGAGTCAACTGCTGGTACGTACAATGACTATTTTGCTACAGTCCAATTACAGTGCATTGCAGCTTGTAAGGATACAAGGAACAAATTTGTGAGATCTTCAATCCCCAATTTTCTGGTTCCACTAGTAACGTTTAGAGCTCCTTTGGAGGAATTTGAGAATGTTAGAGCTGTTGCACTTTCTGTGATAGGCATCCTATGCCAGGAGTTTCCTGTAATTGGAAGTTTGCTTCAGCAACTTCTCCTGACAGTCGATAAGGTTGATAGCAGCAGAACTGCTTGTAAACGTTTGATCAGTGATGGATCATACATAGAGAACTCCATTTGA 969 0.4169 MAAAGSSSPSSVNTISGNVNASSSAADAAAPSASSAIDFLSICHSLKTTKRAGWIRKHVKDPESIGDHMYRMGLMALIASDISGIDRNKCIKMAIVHNIAEAIVGDITPSDGVSKEEKSRREREALDHMCKVLGGGSRATEIAELWMEYEANSSPEAKFVKDLDKVEMILQALEYEDGECLFPLSLILYSLYCVMASKTLIRMYTYQQKDLDEFFESTAGTYNDYFATVQLQCIAACKDTRNKFVRSSIPNFLVPLVTFRAPLEEFENVRAVALSVIGILCQEFPVIGSLLQQLLLTVDKVDSSRTACKRLISDGSYIENSI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0990 322 Pfam Cell differentiation family, Rcd1-like 231 283 - -
Lele21g0990 322 SMART hd_13 61 178 IPR003607 -
Lele21g0990 322 PANTHER UNCHARACTERIZED 10 224 IPR039356 GO:0002953
Lele21g0990 322 ProSiteProfiles HD domain profile. 65 169 IPR006674 -
Lele21g0990 322 SUPERFAMILY HD-domain/PDEase-like 35 180 - -
Lele21g0990 322 Gene3D Hypothetical protein af1432 27 183 - -
Lele21g0990 322 Pfam HD domain 43 178 IPR006674 -
Lele21g0990 322 Gene3D - 184 312 IPR011989 -
Lele21g0990 322 FunFam HD domain-containing protein 2 24 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0990 Lele-ChrLele21 6966461 6974384 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Lele21g0990 Rcd1 1.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0990 21 6966461 6974384 Lele21g0990 21 6966461 6974384 ECH
Lele21g0990 21 6966461 6974384 Lele23g1062 23 16197289 16201201 hybridization
Lele21g0990 21 6966461 6974384 Lele24g0977 24 7040133 7043801 hybridization