Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0977 ATGGGTAGACGAAGTAGAACTCTAGCACAACTTAAAAACGAAGCCTTTGAGCCTCCTCCTTCAGAGCAACCACCACCGTTCTATCTTTCTCAGCCACGTCTTCCTTCTTCTTCTTCTTCACCACTCAATTTTGGAACTGACAACAATGGTTTCTTGAATTTAAACGACAAGGTAAGTCCAAGCATGCTACTTGTCATCATAATTCTGGCCATTGTTTTCTTCGTTTCTGGGTTGATTCACCTTCTAGTTAGATTCCTATGGAGGCCTCAACCCAGAGAACCAGATGATTCAGACAATGTGTCTGCTCTTCAAGGTCAATTACAGCAACTGTTTCATCTTCATGATGCTGGCGTTGACCAGTCCTTCATAGATAACACCCTCCCTGTGTTCCATTACAAAGCAATCATAGGATTGAAAGACCCATTTGATTGTGCTGTGTGCTTGTGTGAATTTGAAGCTGATGATAAACTCAGATTGTTACCTAAATGCAGCCATGCTTTTCACATGGAGTGCATTGATACTTGGCTCTTGTCTCACTCAACTTGCCCTCTCTGTAGAGCTAGCTTACTCTCTGCTGATTTCTCTCCCACGAACCCTTCTTCTTCCTCTTCTCCGTTCGTCTTCGTTCTAGAATCTGGGAGTGAAAGTTCCAGAGAGATTATTGTTCCGGAAAGAGAGAGTAGGACCAGTTCTGTGATTGCAGATAACGAACATGTAGATTTGTCACACAAATCTGTTGATTTAAATTCAGATTCTGCTAATAATCCTGATCAGATTCCTTTTGGGGAATCGCATGAGAAAGTGGTCACTGTGAAGCTGGGGAAGTTCAGGAATGTCGGTGAAGGAGGAAGCAGTGAAGAAGACATGGGAGGAGAAGAAGCTAGAAGGTGTCTTTCAATGGGGTCATTTGCTTATGTTATGGACGAGAATTCTTCACTTCAGGTACCAGTAAGAGCGACGATGAAGAAGCAATCAAGTAAGAAACCTGCTTTGCCTTTAACACCAGGAAGAAGGATTGCCATGTCAGAATGTGATTGTGAATCCACGAGAGATTTCAAGTTTACAGATTTTGAAGCAGTGAAAGGTGTTGTTGATGAGAAGAATTCTTCTGAAACTGCAAGTATTGAGAGAAGCAGAAAAGAGAGCTTCTCTGTTTCAAAGATTTGGCTTCGAGGAAAGAAAGAGAAGCCACCAGCCATGGCTGATGATTCTTCCTCGAGGAGGGCTGTTTCGTTTCGATTTGCAGAAGCGAGGGATGATGATGATGATTCGAAGGAGAAGAATGGGAAATCTGAGATGGAGATTGGGAAATGGGAAAATGATGATGAAAACCAGAGCTGTTACAGTGTGGATTCTCAGGGAAGAGCACCGTCTTTTGCAAGAAGAACTCTGCTTTGGCTTACTGGAAAACAGAACAAGGTTGTTCATTCATCTTCTGATTCAAACTTGTAG 1452 0.4263 MGRRSRTLAQLKNEAFEPPPSEQPPPFYLSQPRLPSSSSSPLNFGTDNNGFLNLNDKVSPSMLLVIIILAIVFFVSGLIHLLVRFLWRPQPREPDDSDNVSALQGQLQQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLSADFSPTNPSSSSSPFVFVLESGSESSREIIVPERESRTSSVIADNEHVDLSHKSVDLNSDSANNPDQIPFGESHEKVVTVKLGKFRNVGEGGSSEEDMGGEEARRCLSMGSFAYVMDENSSLQVPVRATMKKQSSKKPALPLTPGRRIAMSECDCESTRDFKFTDFEAVKGVVDEKNSSETASIERSRKESFSVSKIWLRGKKEKPPAMADDSSSRRAVSFRFAEARDDDDDSKEKNGKSEMEIGKWENDDENQSCYSVDSQGRAPSFARRTLLWLTGKQNKVVHSSSDSNL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0977 483 MobiDBLite consensus disorder prediction 1 40 - -
Lele21g0977 483 CDD RING-H2_PA-TM-RING 143 186 - -
Lele21g0977 483 Pfam Ring finger domain 143 186 IPR001841 -
Lele21g0977 483 SUPERFAMILY RING/U-box 125 191 - -
Lele21g0977 483 SMART ring_2 144 185 IPR001841 -
Lele21g0977 483 MobiDBLite consensus disorder prediction 412 441 - -
Lele21g0977 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 193 IPR013083 -
Lele21g0977 483 MobiDBLite consensus disorder prediction 394 455 - -
Lele21g0977 483 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 55 389 - -
Lele21g0977 483 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Lele21g0977 483 FunFam RING-H2 finger protein ATL46 105 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0977 Lele-ChrLele21 6830417 6831868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0977 48 479 C3H Transcription Factor Family AT2G18650 47.046 1.04e-96 296