LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0964	ATGGGATCCAACCTCAGTTGCTGTGGTTCAGACAAGGTCGAAGAAGTGTCAGGATCTGGTAGTGTGCCGAACAACAATTCATGGAGAATATTCAAATACAAGGAGTTGCATGCGGCTACCAATGGTTTCAGTGAGGATTGTAAACTTGGTGAAGGTGGCTTTGGAAGTGTCTACTGGGGAAAAACCACTGATGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCAATGAATTCAAAGGCAGAGATGGAATTCGCAGTAGAAGTAGAAGTTCTGGGAAGGGTAAGGCACAAGAATTTGCTTGGCCTCAGAGGTTACTGCGCCGGTGACGAACAACGACTCATAGTTTATGATTACATGCCAAATCTCAGCCTTCTCTCTCACCTCCATGGCCAGTTCGCTGCCGAAGTCCAGCTCGACTGGAAAAGAAGAATGAACATCGCCATCGGCTCAGCTCAAGGCCTACTGTACTTGCATCACGAGGTAACGCCTCATATAATCCACAGAGATATAAAGGCAAGCAATGTTCTGTTAAACTCAGACTTCGAGCCACTGGTTGCTGATTTTGGGTTTGCGAAGCTAATCCCAGAAGGGGTAAGCCACCTCACGACCCGAGTGAAGGGCACTTTGGGGTACTTAGCTCCTGAGTACGCCATGTGGGGTAAGGTCTCTGAAAGCTGCGATGTTTATAGCTTTGGGATTCTTCTGCTAGAGTTAGTCACAGGAAGGAAACCCATAGAGAAGCTACCAGGAGGGCTAAAGAGAACCATAACTGAGTGGGCTGAACCATTTATAAGCAAAGGCAAGTTCAGAGAAATGGTGGATCGACGACTTCGAGGGAACTTCGATGAGAGACAAGTGGAACAGATGATCAATGTGGCTTCTCTTTGTGTTCAAAGTGAGCCTGAGAACCGACCAAACATGAAGCAAGTGGTTAATCTGTTAAAAGGGTATGAAGCAGATCATGGGATGGTGATGAAGACGAGGATAGATAGTATTAAGTATAATGAACAACTTATGGAGCTTGATCAGAAAAGTGATGATGAAGATGATGAAACCAATGGTGGTTACGGTGTTTTCAGTGCTCTTGAGGTTCAAAAGATGTATGATCCTTACAAGCAACGCCATGGTGATGCAAAAATGGCGAAACCAATTTGA	1155	0.4537	MGSNLSCCGSDKVEEVSGSGSVPNNNSWRIFKYKELHAATNGFSEDCKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDEQRLIVYDYMPNLSLLSHLHGQFAAEVQLDWKRRMNIAIGSAQGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPFISKGKFREMVDRRLRGNFDERQVEQMINVASLCVQSEPENRPNMKQVVNLLKGYEADHGMVMKTRIDSIKYNEQLMELDQKSDDEDDETNGGYGVFSALEVQKMYDPYKQRHGDAKMAKPI	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g0964	384	SUPERFAMILY	Protein kinase-like (PK-like)	21	314	IPR011009	-
	Lele21g0964	384	FunFam	PTI1-like tyrosine-protein kinase At3g15890	17	118	-	-
	Lele21g0964	384	Gene3D	Transferase(Phosphotransferase) domain 1	119	331	-	-
	Lele21g0964	384	Gene3D	Phosphorylase Kinase; domain 1	17	118	-	-
	Lele21g0964	384	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	165	177	IPR008271	GO:0004672\|GO:0006468
	Lele21g0964	384	PANTHER	OS01G0253100 PROTEIN	23	319	IPR045271	-
	Lele21g0964	384	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lele21g0964	384	Pfam	Protein tyrosine and serine/threonine kinase	47	314	IPR001245	GO:0004672\|GO:0006468
	Lele21g0964	384	SMART	serkin_6	43	314	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g0964	384	ProSiteProfiles	Protein kinase domain profile.	43	324	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g0964	384	FunFam	PTI1-like tyrosine-protein kinase At3g15890	119	332	-	-
	Lele21g0964	384	CDD	STKc_IRAK	49	316	-	-
	Lele21g0964	384	ProSitePatterns	Protein kinases ATP-binding region signature.	49	72	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0964	Lele-ChrLele21	6715253	6717174	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g0964	19	355	Trihelix Transcription Factor Family	AT1G70460	45.170	9.85e-97	301

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Lele21g0964		PK_Tyr_Ser-Thr	2.7e-44	CL0016