Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0962 ATGCTTAATTCTCTTGGCATGTTTCATGCCCCCCTCGAGAATAATAGAAAACCAAACCAAACCTCCCCACACAACTCAATTCAAAAGCCCTCAAAATCCTTGCAGCTTCCTTCCCACAATTCGAATTCGCTTCCAATCAGCAAACTGTTAATCCCTTCCAACGCAAAGCTTCCAACTTGTTCGTTCGTTCATATGGGAATTGAGAGAGGAGGCCTTAAGGGCTTACGTGCCGGGTGGAGCGTCGCCGCCAAGCCATGCGACTCCTGCAAATCGGAGGCTTCCGCCGTGTTCTGCCGCACTGATTCCGCCTTCCTCTGCATGGCCTGTGACTCCCGAATTCACTGCGGTAATAAGCTCGCTTCCCGCCACGAGCGTGTTTGGATGTGCGAGGTTTGTGAGCAGGCCCCTGCTTCCGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGTGTCACCTGCGATTCCGACATCCACTCCGCCAACCCACTCGCTCGCCGCCACGAGCGCGTCCCGGTGGAGCCCTTTTATGACTCTGCTGAGTTGGTGGCGAAATCCTCAGCCGCCGTTGCTGCTTTCAACTTCTTCGTCCCCAGCGACAATGGGATTTGCTCCGACGGGTTCCAAACCGACGATCCCGAACCAGTTCCGTGGATGGTTCCCAACCAGAATTTCAATTCCAAGGTCGTGGGTGCTCCGGAAGTTAAGTCCGGCGACATGTTCTTCACGGAAATGGATCCGTTTATGGATTTCGATTACTCCAATTCTTATCAGAATAATAACAATCACGGCGCGGCAAACGACAGCGTTGTACCGGTTCAAAACAAACCTGTTACGGCTCCGATGATCAATCACTCGGAGACTTGCTTCGATATTGATTTTTGCAGATCGAAGCTTTCTTCTTTTAGCAGCTACCCAAGCCAAAGTATTTCGTCGTCTTCGCTTGATGTTGGGGTTGTACCAGACTCAGTGTCAGAAATGTCATTCTCCTTGGGGCGAAACATCAGCTACAGCTCCGAATCCGGCGGAATCGGGTCGGCGGGTAACAACCCGGCAACCCAACTGGGCGGGATGGATCGGGAAGCGAGGGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACCATCCGATACGCTTCGAGAAAAGCATACGCAGAGACCCGACCCAGGATCAAGGGTCGGTTCGCTAAACGGAGCGAAACCGAGTCGGAGGTAGACCGGGTGTACAGCCCCGTCAGCTCGGGGGGTCTGATGATGGACGCTCAGTACGGCGTCGTACCATCTTTTTAA 1296 0.5347 MLNSLGMFHAPLENNRKPNQTSPHNSIQKPSKSLQLPSHNSNSLPISKLLIPSNAKLPTCSFVHMGIERGGLKGLRAGWSVAAKPCDSCKSEASAVFCRTDSAFLCMACDSRIHCGNKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAELVAKSSAAVAAFNFFVPSDNGICSDGFQTDDPEPVPWMVPNQNFNSKVVGAPEVKSGDMFFTEMDPFMDFDYSNSYQNNNNHGAANDSVVPVQNKPVTAPMINHSETCFDIDFCRSKLSSFSSYPSQSISSSSLDVGVVPDSVSEMSFSLGRNISYSSESGGIGSAGNNPATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSETESEVDRVYSPVSSGGLMMDAQYGVVPSF 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0962 431 Pfam B-box zinc finger 126 171 IPR000315 GO:0008270
Lele21g0962 431 SMART bboxneu5 129 171 IPR000315 GO:0008270
Lele21g0962 431 SMART bboxneu5 81 128 IPR000315 GO:0008270
Lele21g0962 431 CDD Bbox1_BBX-like 129 171 - -
Lele21g0962 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 85 412 IPR045281 GO:0009909
Lele21g0962 431 MobiDBLite consensus disorder prediction 338 358 - -
Lele21g0962 431 MobiDBLite consensus disorder prediction 14 39 - -
Lele21g0962 431 CDD Bbox1_BBX-like 85 128 - -
Lele21g0962 431 ProSiteProfiles Zinc finger B-box type profile. 124 171 IPR000315 GO:0008270
Lele21g0962 431 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Lele21g0962 431 Pfam CCT motif 358 400 IPR010402 GO:0005515
Lele21g0962 431 ProSiteProfiles Zinc finger B-box type profile. 81 128 IPR000315 GO:0008270
Lele21g0962 431 MobiDBLite consensus disorder prediction 9 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0962 Lele-ChrLele21 6697909 6699870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0962 65 431 C2C2-CO-like Transcription Factor Family AT5G57660 53.298 2.18e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele21g0962 zf-B_box 5.3e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0962 21 6697909 6699870 Lele21g0962 21 6697909 6699870 ECH
Lele21g0962 21 6697909 6699870 Lele23g1090 23 16454841 16456066 hybridization
Lele21g0962 21 6697909 6699870 Lele24g0940 24 6680862 6682092 hybridization