LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0951	ATGGGTCGAGCTCCATGCTGTGACAAGGCTAATGTCAAGAAAGGGCCATGGTCCTCCGAAGAAGATGCTAAACTCAAAGCCTACATCGAAAAGTATGGAACTGGCGGCAACTGGATTGCTCTTCCTCAAAAAATTGGGCTCAAGAGATGTGGAAAGAGTTGCAGACTGAGATGGTTAAATTATCTGAGGCCTAATATCAAGCATGGTGGCTTTACTGAAGAAGAAGACAACATCATCTGTAGCCTTTACATTAGCATCGGAAGCAGGTGGTCGATAATCGCAGCACAGCTACCAGGAAGAACAGACAATGACATAAAGAACTATTGGAACACCAGATTGAAGAAGAAGTTACTGGGAAGAAGAAAACAATCTTCTGGTTTCAATAATCCAAGAGACAGAAACGAACTTGATGATTCATCAAATGCCCTAAGCAACTCGGCTCTTGAACGCCTTCAACTTCATATGCAACTTCATCATCATCAAGGCCTCCAAAACCAAAACCCTACGACTTTCTCTAATTTCTTCAACAATCCTGCACTCCTCTGGCCCACCACCACTAAGTTCCATCATCCTCTGATGACTGGTAATGATAATAAAAACCCTGATCAGTCACAGAAAGACCATGAGCAATTCTACAAACCAACTGTCCCATCTAGTACATCTCTTCAACAACAAGAACATGATGAAAAGATCAACGGTTCTTCTTCACAGGTTGACATGTCGGTTCCTTTCATGGCCTCGGGGATTGAAGAAGGAGTACATCGTCCGCAGCAGCAGCAGCAGAATCATCAGCAAGTTTCTGCACTTCAAGCTGAGTTGCATGAGATTATTCTCAGCAATAATATGACGACACAGCAGGATAATCAAGATGAGATGGCTGATTTTGATTGTTTTGCAGAGATGAATTTGAATGATTCTTCGAAGGACATGAACTTGATGAACATGTGGTGGTCCAATAATGAATTAATGGCCAAATCAGCATCTTCCAGTTCTTGGGGTTCAAGAACAAGCACAAGTACTGCTGCTGTTCTTCATCCAGAAGGGATGTTTCAAGATAATTATAATGAACTCGTGGCCGGTTATAGTTTGTAG	1092	0.4231	MGRAPCCDKANVKKGPWSSEEDAKLKAYIEKYGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSGFNNPRDRNELDDSSNALSNSALERLQLHMQLHHHQGLQNQNPTTFSNFFNNPALLWPTTTKFHHPLMTGNDNKNPDQSQKDHEQFYKPTVPSSTSLQQQEHDEKINGSSSQVDMSVPFMASGIEEGVHRPQQQQQNHQQVSALQAELHEIILSNNMTTQQDNQDEMADFDCFAEMNLNDSSKDMNLMNMWWSNNELMAKSASSSSWGSRTSTSTAAVLHPEGMFQDNYNELVAGYSL	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g0951	363	CDD	SANT	71	113	IPR001005	-
	Lele21g0951	363	FunFam	Transcription factor MYB36	70	139	-	-
	Lele21g0951	363	PANTHER	OS09G0431300 PROTEIN	1	285	-	-
	Lele21g0951	363	CDD	SANT	16	62	IPR001005	-
	Lele21g0951	363	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	63	117	IPR017930	-
	Lele21g0951	363	SUPERFAMILY	Homeodomain-like	11	109	IPR009057	-
	Lele21g0951	363	Gene3D	-	7	68	-	-
	Lele21g0951	363	ProSiteProfiles	Myb-like domain profile.	9	62	IPR001005	-
	Lele21g0951	363	MobiDBLite	consensus disorder prediction	210	235	-	-
	Lele21g0951	363	Gene3D	-	70	141	-	-
	Lele21g0951	363	FunFam	Transcription factor RAX3	7	68	-	-
	Lele21g0951	363	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	62	IPR017930	-
	Lele21g0951	363	MobiDBLite	consensus disorder prediction	191	235	-	-
	Lele21g0951	363	ProSiteProfiles	Myb-like domain profile.	63	113	IPR001005	-
	Lele21g0951	363	MobiDBLite	consensus disorder prediction	120	140	-	-
	Lele21g0951	363	Pfam	Myb-like DNA-binding domain	14	62	IPR001005	-
	Lele21g0951	363	Pfam	Myb-like DNA-binding domain	69	111	IPR001005	-
	Lele21g0951	363	SMART	sant	13	64	IPR001005	-
	Lele21g0951	363	SMART	sant	67	115	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0951	Lele-ChrLele21	6599486	6600810	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g0951	1	236	MYB Transcription Factor Family	AT5G57620	63.563	4.77e-98	292

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele21g0951		Myb_DNA-binding	2.8e-13	CL0123