Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0874 ATGCTTTTGGAGGGAAAAATACTTTTCAGAACAATGAGTCACTTGAAGAATTCGCCTCGTCACCACAGTGACATTGAGGCCGGAAATAGCAGCCACGGCGATCATGACGACGCGGAAAGTTCATCTGATCCATTTGTCATTCCCAGAACAAAGGATGCTTCTATTGAACGCCTCAAACGTTGGAGGCAAGCTGCGCTTGTGCTCAATGCTTCTCGTCGGTTCCGTTACACGTTGGACTTGAAAAAAGAAGAGGAGAATCGGCAAATATTGGGGAACGTTAGGGCTCATATGGAAGCAATTAGAGCTGCATATCTGTTCAGAGATGCTATAAACCGGGGGAATGGAATCGCACCTCCTCCTCCAACCTCAGTTGGTGGTGACTTTGGTATTGGAAATGACCAACTTCTTTCAATTTCTAGGGATCATAAAGTCGACGTTCTCGAGCAATATGGAGGGGCTAGAGGGCTATCAGAATTGTTGAAATCTAGTACAGAGAAGGGGATTAATGGTGATGATGCAGATCTATTAAAACGAAGGAATGCTTTTGGTTCAAACAATTATCCTCGAAAGAAAGGAAGGACTTTCCTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATATTAATGGTAGCTGCGGCAGCTTCATTAGCACTGGGAATAAAATCTGAGGGGATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTAATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAACAGTCTCTTCAGTTTCAACTTCTAAATGAGGAGAAGAGAAATATACATTTAGAGGTTATAAGAGGTGGTAGAAGAGTTGAGATCTCCATATATGACATCGTTGTTGGTGATGTTGTGCCCCTTAATATTGGTAATCAGGTCCCTGCTGATGGTATCTTGATCTCCGGTCACTCTCTTGCTATTGATGAATCAAGTATGACTGGAGAGAGCAAGACAGTCTACAAGGACTCTAAAAACCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACCATGCTGGTACTCGGTGTTGGTTTAAATACTGAATGGGGGCTTCTGATGTCTAGTATTTCAGAAGACAATGGTGAAGAAACGCCCTTACAGGTACGTTTGAATGGTGTTGCCACTTTCATTGGTATTGTTGGACTCACTGTTGCTGTTATCGTTTTGATTGTGTTGTTGGCCAGATATTTCTCTGGGCATACTAGAGATGCAAATGGAAATGTTGAATTTAAGGCAGGCAAGACAAAAGTTGGTGATGCAATTGATGGGGCAATTAAAATTGTTACAGTTGCGGTGACCATTGTTGTAGTTGCAGTTCCTGAAGGGCTTCCTCTAGCAGTTACCTTAACACTTGCCTACTCGATGAGAAAAATGATGGCGGACAAAGCTTTGGTGAGGAGGCTTTCAGCCTGTGAGACAATGGGCTCTGCCACAACCATTTGCAGTGATAAGACTGGTACATTGACCATGAATCAGATGACCGTGGTTGAGGCTTACAGTGGTGGGAAGAAGATTGTTCCAGCTCACAACAAGTCAGAGCTCCCTGAGAATCTCTACACTTTGATCATTGAAGGTGTTGCACAGAACACCAATGGTAGTGTCTATATGGTTGGGGGTGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGCTATTAAGCTGGGAATGAAATTTGAGGCTGCCAGATCAGAGTCATCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAACGTGGAGGAGTTGCAGTAAAGACGTTGGATTCTCAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCCTGTTGTACATGGTATATTGATGCAAATGGCCAGTTAATGAAGATGGATGATAAGAAGATGACATTTTTCCTAAAGGCTATTGAAGATATGGCTGCTGATAGTTTACGTTGTGTTGCCATGGCATATAGATCATATGAAATTACAAGTGTTCCGACTAGCGAAGAAGAACTTGCTCACTGGTCCTTACCAGAGGATGATCTCATTTTACTGGCTATTGTTGGTCTGAAGGATCCCTGTCGACCAGGTGTCAAAGATGCTGTGCGACTTTGCCAGAAAGCAGGAGTTAAGGTACGAATGGTGACTGGTGACAATTTAAAGACTGCTAAATCTATTGCTGTAGAGTGTGGAATACTTGGATCATTGGCAGAAGCTGTGGAGCCGTTCATCTTTGAAGGAAAAGTAACAAACATCATTGAAGGAAAAGAGCCAAACATCATTGAAGGAAAATCATTTCGTGCATTGTCAGATGAACAGAGAGAACAAATTGCCCAAAGTTTAATTGTTATGGGACGGTCTTCTCCTAATGACAAGCTTCTGCTTGTTCAAGCATTGAGGAAGAAGGGGCACGTTGTGGCTGTTACTGGAGACGGAACCAATGATGCTCCTGCCCTACATGAGGCCGATATAGGTCTTGCAATGGGTATTCAAGGGACAGAAGTTGCCAAGGAGAGTTCAGATATCATTATTTTGGACGACAACTTTGCTTCAGTAGTGAAGGTTGTCAGATGGGGGCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAACTTACTGTCAATGTTGCAGCTCTTGTTATCAATGTTGTTTCTGCAGTTTCCTCTGGCAATGTCCCACTAAATGCAGTACAGCTTCTTTGGGTAAATCTTATCATGGATACACTTGGAGCATTAGCCTTGGCAACTGAACCACCTACAGATCATTTGATGGATCGGAATCCAGTTGGTAGAAGTGAACCTCTTATAACACACTACATGTGGAGGAATCTGCTTATACAGGCAGCGTATCAAGTGTCTGTTTTGCTTGTACTGACTTTCCGAGGTACCACTTTATTGAATCTGAAGCATCACTCTGACGCTACCATAGTGAAGAACACTCTAATATTCAATGCATTTGTTCTCTGTCAAGTCTTTAATGAATTTAATGCTAGAAAGCCAGATGAAAAGAACATATTCAGGGGAATCACAAAAAACTACCTCTTTATGGGGATAGTAGCTTTAACTCTCGTACTTCAGGTTATCATCATTGAATTCCTGGGCAAGTTCACTTCGACAGTGAGGCTTAATTGGAAGCAGTGGCTCATCTGCGTTATCATTGGAATTATCAGCTGGCCTCTTGCTTTTATTGGGAAATTCATACCCGTGAAAAATAGTAATTGTCACAAGATCTTTTATAAGTTGTGCTCCAAGCAACGAATACCATGA 3291 0.4196 MLLEGKILFRTMSHLKNSPRHHSDIEAGNSSHGDHDDAESSSDPFVIPRTKDASIERLKRWRQAALVLNASRRFRYTLDLKKEEENRQILGNVRAHMEAIRAAYLFRDAINRGNGIAPPPPTSVGGDFGIGNDQLLSISRDHKVDVLEQYGGARGLSELLKSSTEKGINGDDADLLKRRNAFGSNNYPRKKGRTFLMFMWDACKDLTLIILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFQLLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVVPLNIGNQVPADGILISGHSLAIDESSMTGESKTVYKDSKNPFLMSGCKVADGSGTMLVLGVGLNTEWGLLMSSISEDNGEETPLQVRLNGVATFIGIVGLTVAVIVLIVLLARYFSGHTRDANGNVEFKAGKTKVGDAIDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAYSGGKKIVPAHNKSELPENLYTLIIEGVAQNTNGSVYMVGGDVEVSGSPTEKAILHWAIKLGMKFEAARSESSIIHVFPFNSEKKRGGVAVKTLDSQVHIHWKGAAEIVLACCTWYIDANGQLMKMDDKKMTFFLKAIEDMAADSLRCVAMAYRSYEITSVPTSEEELAHWSLPEDDLILLAIVGLKDPCRPGVKDAVRLCQKAGVKVRMVTGDNLKTAKSIAVECGILGSLAEAVEPFIFEGKVTNIIEGKEPNIIEGKSFRALSDEQREQIAQSLIVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVSAVSSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRNPVGRSEPLITHYMWRNLLIQAAYQVSVLLVLTFRGTTLLNLKHHSDATIVKNTLIFNAFVLCQVFNEFNARKPDEKNIFRGITKNYLFMGIVALTLVLQVIIIEFLGKFTSTVRLNWKQWLICVIIGIISWPLAFIGKFIPVKNSNCHKIFYKLCSKQRIP 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0874 1096 Pfam haloacid dehalogenase-like hydrolase 490 829 - -
Lele21g0874 1096 Gene3D - 201 1070 - -
Lele21g0874 1096 FunFam Calcium-transporting ATPase 53 109 - -
Lele21g0874 1096 FunFam Plasma membrane calcium-transporting ATPase 2 697 860 - -
Lele21g0874 1096 PANTHER CATION TRANSPORTING ATPASE 102 1077 - -
Lele21g0874 1096 FunFam Calcium-transporting ATPase 9 plasma membrane-type 347 517 - -
Lele21g0874 1096 SUPERFAMILY HAD-like 491 920 IPR036412 -
Lele21g0874 1096 FunFam Calcium-transporting ATPase 248 369 - -
Lele21g0874 1096 Gene3D - 174 369 - -
Lele21g0874 1096 CDD P-type_ATPase_Ca_PMCA-like 175 948 - -
Lele21g0874 1096 FunFam Calcium-transporting ATPase 832 1079 - -
Lele21g0874 1096 PRINTS P-type cation-transporting ATPase superfamily signature 317 331 - -
Lele21g0874 1096 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Lele21g0874 1096 PRINTS P-type cation-transporting ATPase superfamily signature 714 724 - -
Lele21g0874 1096 PRINTS P-type cation-transporting ATPase superfamily signature 692 703 - -
Lele21g0874 1096 PRINTS P-type cation-transporting ATPase superfamily signature 815 834 - -
Lele21g0874 1096 PRINTS P-type cation-transporting ATPase superfamily signature 839 851 - -
Lele21g0874 1096 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Lele21g0874 1096 Pfam E1-E2 ATPase 271 471 - -
Lele21g0874 1096 SMART Cation_ATPase_N_a_2 150 223 IPR004014 -
Lele21g0874 1096 FunFam Calcium-transporting ATPase 201 258 - -
Lele21g0874 1096 PRINTS Sodium/potassium-transporting ATPase signature 610 628 - -
Lele21g0874 1096 PRINTS Sodium/potassium-transporting ATPase signature 486 507 - -
Lele21g0874 1096 PRINTS Sodium/potassium-transporting ATPase signature 236 256 - -
Lele21g0874 1096 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 781 896 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele21g0874 1096 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 434 517 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele21g0874 1096 SUPERFAMILY Calcium ATPase, transmembrane domain M 150 1078 IPR023298 -
Lele21g0874 1096 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 142 1077 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lele21g0874 1096 SFLD C1.7: P-type atpase like 475 867 - -
Lele21g0874 1096 SUPERFAMILY Calcium ATPase, transduction domain A 271 366 IPR008250 -
Lele21g0874 1096 Gene3D - 503 699 IPR023299 GO:0000166
Lele21g0874 1096 Gene3D - 490 860 IPR023214 -
Lele21g0874 1096 MobiDBLite consensus disorder prediction 18 42 - -
Lele21g0874 1096 Pfam Cation transporting ATPase, C-terminus 900 1075 IPR006068 -
Lele21g0874 1096 FunFam Calcium-transporting ATPase 503 699 - -
Lele21g0874 1096 MobiDBLite consensus disorder prediction 18 46 - -
Lele21g0874 1096 Pfam Cation transporter/ATPase, N-terminus 151 218 IPR004014 -
Lele21g0874 1096 SFLD p-type atpase 475 867 IPR044492 -
Lele21g0874 1096 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 696 IPR023299 GO:0000166
Lele21g0874 1096 Pfam Ca2+-ATPase N terminal autoinhibitory domain 43 85 IPR024750 GO:0005516
Lele21g0874 1096 Gene3D - 53 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0874 Lele-ChrLele21 5822209 5834301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0874 13 1077 Primary Pumps ATPases AT5G57110 72.973 0.0 1565