Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0864 ATGACGGACCAGACGGAGTTCAGTGTTCTATGCAGCCTCTTCACATGGACCCAGAGAAGCAAGTCGTCAGCCAAGAAGCGCTCCAAGTTCCGCAAATTCCTGGATGCCTTCTGCAAAGACAGAAATTATTTCAGTGCTATTCGCTTGATTCTTCCCAATCTCGACCGAGAACGAGGCTCCTATGGCCTCAAGGAGTCCGTTCTAGCTACCTCCCTCATTGACGCTCTTGGGATGTCCAGGCAAGGGTTGGCATCTGGTAGATTGACAATAAGGGAGTTAAATGAGTTGCTTGATAAACTAGCTTCAAGTGAAAACAGGGCTGAAAAGACTTCAATTCTTTCTACCCTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAGCTAAAGGATCGGAATCAACGCCATAAGAGACAGCTAGGTAACTTGTATGTTCTGAAGACTGTATTGTTATTCTTTCATAGTTTTTTCCCAGTTGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAAATAGCAAAGAGAGTTGCTAGTGCAACTGAAGCGTGGAAAAAGTTAACTGATTCATATTACAGGAACTTTCTTGACCATTCAGAATATCAACATGGGATGTCAGACATCATGTTACAGAATATTCTTGTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCATTTTGCTGAATTTGGCTCAAATCAGGAAATCGCAAAAGCAGCAAGGGACGGGCTTGATAGTGATAGACAGTTATGTTAACGACTAGACGTTGCATTTGATATCCTTTATGTTGGAGATACAAGTGTAATACACCAGACTCTGAAGGAAAGACACGAGCTTCTCTGTAAAGTTGTGAGGCCCTTAAGGGGTAGTTTGGAAATCTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATCTGGGGAAACTCATTGGTCATTTATCGCTCGTAATGTGGATGAAGTTGAGAGATTTTTCAAAGAAACTATCGAGAATAGAGATGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGCGACCGTGGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATTCATGCTGGTTCTGATCTGGATGCACTTATCATAGCAGAGCGTCCCTCCCCCAGTGCACATCCCAAACGAGTTTTCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGATCAATAATTCTCTCTATAACCAGTGACATTCGAGCTATAGAATCTGAGGTTTGTCAGATGTCATGTGTTTTGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAATCATTTATAGAACTCGTGCATTCTAGCAATGGCACCACAAAGGTGAGCATAGAGTATGGCAGCATGCAGGATAGTAAATCAAAACGCATGAAATTCTCTAAAAGGGATGGGAAAAAAAACATGTCCGTTGTCCCTTCTCATTTTATTCAGACTGATGTTTCCAATGTTAAGGGTGGCTCGTTAATACTTTCAAATATGATGTTTTTTGCCCTAGGTCCTAACTGTATTGAAAAGGAGAATAGCTTCTCTTCCTTGCTGTGCAGCCAAGGTGCTGCAAAGAGAGAGGAGAGAGAAGTGGGGGCTGGTTGGACCCACCCAGCCATGGCCCCTCCTCTTCTCTCTTTCTCTATCGGGTACTGTACCTATGCTGCATGGAGGAGAAGCCGGTGGGTGCAATAA 1935 0.4212 MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDAFCKDRNYFSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRQGLASGRLTIRELNELLDKLASSENRAEKTSILSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQLGNLYVLKTVLLFFHSFFPVDIEVGKAVRPQIAKRVASATEAWKKLTDSYYRNFLDHSEYQHGMSDIMLQNILVDRCILDGEMLVWDKSLNHFAEFGSNQEIAKAARDGLDSDRQLCXRLDVAFDILYVGDTSVIHQTLKERHELLCKVVRPLRGSLEILIPNGGLNSNCPSGETHWSFIARNVDEVERFFKETIENRDEGIVLKDLGSKWEPSDRGGKWMKLKPEYIHAGSDLDALIIAERPSPSAHPKRVFSFCRVGTGLSDDELDALVTKLKPYFRSIILSITSDIRAIESEVCQMSCVLVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNGTTKVSIEYGSMQDSKSKRMKFSKRDGKKNMSVVPSHFIQTDVSNVKGGSLILSNMMFFALGPNCIEKENSFSSLLCSQGAAKREEREVGAGWTHPAMAPPLLSFSIGYCTYAAWRRSRWVQ 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0864 644 CDD Adenylation_DNA_ligase_IV 201 408 IPR044125 GO:0005524
Lele21g0864 644 Gene3D DNA ligase/mRNA capping enzyme 206 406 - -
Lele21g0864 644 ProSiteProfiles ATP-dependent DNA ligase family profile. 303 419 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele21g0864 644 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 235 404 - -
Lele21g0864 644 ProSitePatterns ATP-dependent DNA ligase signature 2. 380 404 IPR016059 GO:0003909
Lele21g0864 644 Pfam DNA ligase N terminus 6 150 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele21g0864 644 Gene3D - 1 82 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele21g0864 644 Gene3D - 83 180 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele21g0864 644 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 171 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele21g0864 644 PANTHER DNA LIGASE 4 3 81 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Lele21g0864 644 Coils Coil 90 113 - -
Lele21g0864 644 Pfam ATP dependent DNA ligase domain 251 404 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele21g0864 644 Gene3D - 408 526 IPR012340 -
Lele21g0864 644 SUPERFAMILY Nucleic acid-binding proteins 428 519 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0864 Lele-ChrLele21 5722096 5730073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0864 258 520 Core DNA Replication Machinery Family AT1G08130 23.856 5.47e-13 70.5