LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0836	ATGAAGAAGGGAAACTTAGGAGGCCTCAATCTCAAGCTCAATGTTCCTGCTTCTGATCAGGTTTCCTTCGCCAAGTTTCTGACTGAAAGCGGGACGTTTAAGGATGGGGATCTGCTTGTCAATCGGGATGGAGTTCGAATTGTGACTGAGACTGAAGTCGAAGCTGCACCCCCCATCAGGCCACTAGACAACCAGTTAAGTTTGGCAGACATAGATATAATCAAAGTGGTTGGTAAGGGAAATGGTGGGGTTGTGCAACTGGTGCAACACAAATGGACTAATCAGTTTTTTGCGCTAAAGGTTATCCAAATGAATATTGAGGAGTCCATGCGAAAGCAGATAGCACAAGAGCTTAAAATCAATCAGTCAGCTCAATGTCCATATGTTGTTATCTGCTATCAGTCATCCTATGATAATGGTGCCATATCAATCATCTTAGAGTACATGGATGGAGGTTCTTTAGCAGATCTTCTGAAGAAAGTTAGAACAATTCCGGAAAAATATCTTGCTGCTATCTGTAAGCAGGTGCTTAAGGGTTTGATATATCTTCACCATGAAAAACATATTATCCACAGGGACTTAAAACCTTCTAATCTGTTGATAAACCATAGAGGGGAGGTGAAGATTACTGACTTTGGTGTGAGTGTAATAATGCAAACTACATCTGGTCAAGCAAATACTTTCATTGGCACATACAACTATATGTCTCCAGAGAGAATCGATGGAAGCCAGAATGGCTACAACTACAAAAGTGATATATGGAGCTTGGGGCTGATATTGCTTGAATGTGCTACTGGGCGGTTTCCATATACCCCACCAGATCAAGGTGAAAGATGGGAAAGTATTTTTGAGCTAATTGAAACTGTTGTCGATAAACCTTCTCCCTCTGCTCCATCTGATCAATTTTCTCCAGAATTCTGCTCGTTTGTCTCGGCATGTTTACAGAAAGACCCAAAAGATAGACTTTCAGCTCAGGATCTTATGGGACATCCTTTTCTCAACATGTATGGGGACTCAGATGTAGATCTTTCTGCTTATTTCAAGAATGCAGGATCGCCATTGGCAACTGTGCCTACTTCTACTTGATCATAG	1092	0.4158	MKKGNLGGLNLKLNVPASDQVSFAKFLTESGTFKDGDLLVNRDGVRIVTETEVEAAPPIRPLDNQLSLADIDIIKVVGKGNGGVVQLVQHKWTNQFFALKVIQMNIEESMRKQIAQELKINQSAQCPYVVICYQSSYDNGAISIILEYMDGGSLADLLKKVRTIPEKYLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSVIMQTTSGQANTFIGTYNYMSPERIDGSQNGYNYKSDIWSLGLILLECATGRFPYTPPDQGERWESIFELIETVVDKPSPSAPSDQFSPEFCSFVSACLQKDPKDRLSAQDLMGHPFLNMYGDSDVDLSAYFKNAGSPLATVPTSTXS	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g0836	363	CDD	PKc_MAPKK_plant_like	86	336	-	-
	Lele21g0836	363	ProSiteProfiles	Protein kinase domain profile.	71	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g0836	363	ProSitePatterns	Protein kinases ATP-binding region signature.	77	100	IPR017441	GO:0005524
	Lele21g0836	363	FunFam	Mitogen-activated protein kinase kinase 6	41	150	-	-
	Lele21g0836	363	SUPERFAMILY	Protein kinase-like (PK-like)	67	338	IPR011009	-
	Lele21g0836	363	Pfam	Protein kinase domain	73	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g0836	363	SMART	serkin_6	71	333	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele21g0836	363	Gene3D	Phosphorylase Kinase; domain 1	49	150	-	-
	Lele21g0836	363	FunFam	Mitogen-activated protein kinase kinase 6	152	352	-	-
	Lele21g0836	363	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	189	201	IPR008271	GO:0004672\|GO:0006468
	Lele21g0836	363	Gene3D	Transferase(Phosphotransferase) domain 1	151	355	-	-
	Lele21g0836	363	PANTHER	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	35	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0836	Lele-ChrLele21	5498047	5503901	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g0836	1	328	MAP Kinase Kinase Gene Family	AT4G29810	67.656	4.47e-172	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Lele21g0836		Pkinase	8.4e-70	CL0016