LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0821	ATGCTGGTAGCGCTTAGCCCTTTGGAGAAGAAACAAGAAGGAAGGGCATTGAGACAAGAGCCTGACACAGACGCAGCTGCTTCCGCTGCTGCTGCAGCAAACCTGCAGAAGCAGTATCATCAGAGAGTGTTCTCATTTAAGCCAGAGGATCCGTTTCTTTTGTTGCTTCTTCTTCTTCCTTCAACCCCCACTCTCCTCTGGTTGATGATGAACGGAGGAGGGAGAAGTAGGTTCCCTTTTACTCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTTGTTTTCAAGTACATGGCTTCTGGTATTCCTATTCCTCCTGATCTTGTCTTCTCCATCAAAAGGGCTTCTTTAGATCACTCTCCTCTCTCTTTAAGGCTCTTGTCTCTCCCACCTCATCACAACTTTGAGTGGAACAACTTGGAGATGGGGTTGGGAAGGAAGATAGATACAGAACCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGAGGTGTTCTAAAGAAGCTTACCCAAATTCTAAGTACTGTGAGAGACACATGCACAGAGGAAATAACCGTTTGAGAAAACCTCTACAGCAACAAGGTTTCAAAACATCGTTAACCCCACCTACCAACAACACAGATTCCTCAACAGTCACAAAAAGTAACAGCACTCCTCATCCTTCACTCTCCCTCACTACTGCCACTCATTCATCATCTTCATCCCACCACAATCCTCATTCCTTCCTCTATAACAATCACCAACCTTCATCAAGATCTTCTTCATCTGGTTTCAGCTTCTCATTACAAGATGATACTGCTTCTATCTTGAATAGTGGTTATGTTTATGATGGGCTGAAGGAAGAGGTGGACGAGCATGATTTCTTCACAGAGCCTTCTGGGACGATGAGAAGCTTCTCTGCTTCATCAATGGAAGATTCTTCGTGGCAACTCACGCCACTGTCAATGAACTCATCGTCTTCTTCCTCGAAGCAGAGGAGGTACTCTGGTTTGTCCATCGAGCACTCCTCTTACTTGGAGCTTCAAAACCAGGCGAACCAGCAAGATCAAGATTGCTACAACATGCTGGGATTGGGCAAATCAGAAGAACCTCAGAATCACAAAACTGTTCATCGTTTCTTCGATGAATGGCCCAACAAAAACAAAAGCTCGGCGTGGCTTGATCTGGACGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACCACCACCAATTCTGATCATCACGACCATTTTCCAGGCTTCAATTTCAGAACCCACCAAGAACTGGGTCGCGACGTTTTGAAACGACAACGGAACATATTGGGTGATGGTGCCCCTGCAAATTCATTACCTGGGCCCCTTTTGGATTCGCCAGAGACATTTCCTAGCAATTTGCAGAGTGAAAGTGGAAGTGCTAGTTTGATACTTTCTTCAAGCTGGAGGATGCCTATCAAATGGGTTTTGCACTGGCAGCCCAACGCAGGAACTATGGTGAATAGCCAAATTCTTAGTGAAGTTTCTCAGTGCGTTGAGAGCATCAATGGCGTCAAAGACGGAAGATGGAAAGCAACTCTAACATTCTATCGACCCAATTTACGAGACCAGTCCCTACAGGCCGAATTTCCGCGTGATTTTCTGGGGATATCGCTTCTTGAGCAACCTAACAAGTACTACTTCATAATTCGCAGCCAGAAGATCGTTCTTGAAGCAGATTCTTCGATTCTGACTATAATGGAGAAGCTGCAATCGTACAAGTCCAAGGTGGCACTCAATTTTGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGCTGAAAGTTGGAAAATTTTCCCCCAATACTTCTGAAAGCCTGAGAGGAATTGTGATGGAGGTTGAGTATCTGCCCATTTCTTCTATAGAGAAATCCAGGCAAGTTATGGAAGAATTCCTTAATATATGGCGAGAAGCAGTGTCAAAAAAATCATTACCGGGTCAATTCATGCATGTGGAACCAAATTATGCAGAATATGGTCTCTCGGATAATTATACTTCGCAACATACAGCTGTTCAGCATGCAACTGCATTGGCCCAACTGTTTGCTACAGTGCAACAACAACCCGGACAGTCTATGAGGAATTAG	2106	0.4482	MLVALSPLEKKQEGRALRQEPDTDAAASAAAAANLQKQYHQRVFSFKPEDPFLLLLLLLPSTPTLLWLMMNGGGRSRFPFTPSQWQELEHQALVFKYMASGIPIPPDLVFSIKRASLDHSPLSLRLLSLPPHHNFEWNNLEMGLGRKIDTEPGRCRRTDGKKWRCSKEAYPNSKYCERHMHRGNNRLRKPLQQQGFKTSLTPPTNNTDSSTVTKSNSTPHPSLSLTTATHSSSSSHHNPHSFLYNNHQPSSRSSSSGFSFSLQDDTASILNSGYVYDGLKEEVDEHDFFTEPSGTMRSFSASSMEDSSWQLTPLSMNSSSSSSKQRRYSGLSIEHSSYLELQNQANQQDQDCYNMLGLGKSEEPQNHKTVHRFFDEWPNKNKSSAWLDLDDKSSTTQLSISIPTTTNSDHHDHFPGFNFRTHQELGRDVLKRQRNILGDGAPANSLPGPLLDSPETFPSNLQSESGSASLILSSSWRMPIKWVLHWQPNAGTMVNSQILSEVSQCVESINGVKDGRWKATLTFYRPNLRDQSLQAEFPRDFLGISLLEQPNKYYFIIRSQKIVLEADSSILTIMEKLQSYKSKVALNFEGVLYKLGDFQLKVGKFSPNTSESLRGIVMEVEYLPISSIEKSRQVMEEFLNIWREAVSKKSLPGQFMHVEPNYAEYGLSDNYTSQHTAVQHATALAQLFATVQQQPGQSMRN	701

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g0821	701	MobiDBLite	consensus disorder prediction	439	462	-	-
	Lele21g0821	701	ProSiteProfiles	WRC domain profile.	149	193	IPR014977	-
	Lele21g0821	701	SMART	QLQ_2	78	114	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Lele21g0821	701	Pfam	QLQ	79	112	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Lele21g0821	701	Pfam	WRC	151	190	IPR014977	-
	Lele21g0821	701	PANTHER	UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49	483	692	IPR013921	GO:0003712\|GO:0006357\|GO:0016592
	Lele21g0821	701	ProSiteProfiles	QLQ domain profile.	79	114	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
	Lele21g0821	701	Pfam	TATA-binding related factor (TRF) of subunit 20 of Mediator complex	478	684	IPR013921	GO:0003712\|GO:0006357\|GO:0016592
	Lele21g0821	701	MobiDBLite	consensus disorder prediction	193	258	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0821	Lele-ChrLele21	5386108	5395304	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g0821	79	194	GRF Transcription Factor Family	AT4G37740	50.427	5.31e-33	132

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRF	Lele21g0821		Med20	2.4e-40	CL0273