Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0810 ATGCTGGTGGCGCTGACTTTGATGATTTTTGCTGGCGTTGGTGAAAGTTCCGAAGGGCCAACTTCCTACAAGGGGTCCTACCTAGCCAATCAAAACGAACCACGTCATAGTTTCTTTTACACCACTTACTACCACCGCTTTCCCCTCTTTGGCTTTTTCTTGGATACAAAACCACTCGTAATCCGAGAAGTAATGGCTGGAGTAGCATCTGATAGTTCACAATTTGACGCTCGTCAATATGATTCAAAAATGGAACTGCTTACTACTGACGGGCAGGACTTCTTTACATCTTATGATGAGGTTCATGATAATTTTGATGCCATGGGTTTGCATGAGAATCTTCTCAGAGGCATTTATGCATATGGATTTGAGAAGCCCTCGGCTATACAGCAAAGGGGAATAGTTCCCTTCATCAAGGGACTTGATGTTATTCAGCAGGCTCAGTCAGGAACTGGAAAGACAGCAACTTTCTGCTCTGGGGTTTTGCAGCAGCTTGACTATAGTTTGATGGAATGCCAGGCCTTGGTATTAGCACCAACTCGAGAACTTGCTCAGCAGATTGAGAAGGTTATGCGAGCACTTGGAGACTATCTTGGTGTGAAGGTTCATGCATGTGTGGGAGGAACTAGTGTTCGTGAAGACCAACGCATTCTATCTAGTGGTGTTCATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGCAGGCAGTCACTTCGGCCAGAGTACATCAAGATGTTTGTCTTGGATGAGGCAGATGAAATGCTTTCTCGAGGTTTTAAAGATCAGATCTATGATATCTTCCAGCTACTTCCATCCCAGATTCAGGTGGGAGTTTTTTCGGCTACGATGCCTCCTGAGGCTCTTGAGATCACTAGGAAGTTTATGAACAAGCCTGTTAGAATTCTTGTGAAGCGTGATGAGCTAACTTTGGAGGGTATAAAACAGTTTCATGTCAATGTTGAGAGAGAGGAATGGAAGCTAGACACACTCTGTGATCTTTATGAAACATTGGCCATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGATCAGATGCGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATTATGCGCGAATTCCGTTCTGGATCTTCTCGTGTTTTAATAACAACTGATCTCTTGGCTCGTGGTATCGATGTCCAGCAAGTGTCACTAGTTATTAATTATGATCTTCCTACTCAGCCTGAGAACTATCTCCACCGTATTGGCCGTAGTGGGAGGTTTGGAAGGAAAGGTGTTGCAATCAATTTTGTGACAAGAGACGATGAAAGAATGCTGTTTGACATCCAGAGATTTTATAATGTGGTAATTGAGGAGCTGCCATCTAATGTTGCTGAACTCCTATAA 1431 0.4403 MLVALTLMIFAGVGESSEGPTSYKGSYLANQNEPRHSFFYTTYYHRFPLFGFFLDTKPLVIREVMAGVASDSSQFDARQYDSKMELLTTDGQDFFTSYDEVHDNFDAMGLHENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPEYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSQIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVAELL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0810 476 Gene3D - 93 310 IPR027417 -
Lele21g0810 476 SMART ultradead3 122 319 IPR014001 -
Lele21g0810 476 Pfam DEAD/DEAH box helicase 128 289 IPR011545 GO:0003676|GO:0005524
Lele21g0810 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 476 IPR001650 -
Lele21g0810 476 FunFam Eukaryotic initiation factor 4A-II 91 310 - -
Lele21g0810 476 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Lele21g0810 476 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 250 258 IPR000629 -
Lele21g0810 476 Pfam Helicase conserved C-terminal domain 329 437 IPR001650 -
Lele21g0810 476 SMART helicmild6 356 437 IPR001650 -
Lele21g0810 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 457 IPR027417 -
Lele21g0810 476 CDD DEADc_EIF4A 107 305 - -
Lele21g0810 476 Gene3D - 311 476 IPR027417 -
Lele21g0810 476 FunFam Eukaryotic initiation factor 4A-III 311 476 - -
Lele21g0810 476 PANTHER RNA HELICASE 84 460 - -
Lele21g0810 476 CDD SF2_C_DEAD 316 446 - -
Lele21g0810 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 304 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0810 Lele-ChrLele21 5306645 5310958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0810 65 476 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 751