Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0808 ATGGAACCCCGTGTTGGCAATAAGTTTCGGCTCGGCCGCAAGATCGGCAGCGGTTCCTTTGGCGAGATCTATTTAGGTACTAATATTCATAGTAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCGAATGTTAGATGGTTTGGAGTGGAGGGAGATTACAATGTTCTAGTGATAGATCTGCTCGGACCCAGTCTTGAAGATCTATTTAACTTCTGCAGTAGGAATCTATCACTGAAGACAGTTCTCATGCTTGCCGATCAAATGATCAACCGAGTTGAGTTTGTTCATTCTAAATCATTTCTACATCGGGACATCAAGCCAGATAATTTTCTTATGGGCTTAGGAAGGCGTGCAAACCAGGTTTATATTATTGACTTTGGTTTGGCCAAGAAATATAGAGATAGTTCAACTCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACAGGAACTGCAAGATATGCTAGCATGAACACTCATCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAGTCTCTTGGTTATGTCCTCATGTACTTTCTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCTGGTACCAAGAAACAGAAGTATGAGAAAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAGGCCTTGTGCCGAGGTTATCCATCGGAATTTGCATCTTATTTTCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTGAAAAGGATATTTCGTGACCTCTTTATTCGGGAAGGTTTCCAGTTTGACTATGTCTTTGACTGGACTATCTTGAAGTATCAGCAATCACAGCTGGCTACTCCTCCTGCACGTGCCCTTGGCCCAAGTGCTGGAACTAGTTCTGGAATGCCTCCTGTTGTGGCTAATGCTGATAGACAGACAGGAGGGGATGAAGGGCTAACTGCTGGTCTTGTTTCGATGGATTCTGTGAGGCGAAGAATGTCGGGGCCCATGTTAAATTCTTCTCCTGGTAACAATATTTTGGGCCAGTCAAGCGGGTCATCTCGGCGAGTTGCTGTTCCAAGTGGCCGTGATGCATTTGTTAGTGGGGAGTCAGATCCACGTACTCGCGCTAATGAAGTTAGCCCCAGAGCTGCTCACAGAATTTCAAGTGGGCATAGAAGTTCACCACTGGGAGCTTCAGATGCAAAAAGAATATCTTCTGGAAGAAATGCTTCTGCTCTTGTCAAGAATTATGAATCAGCTGTCAGGGGCATTGAAGGCTTGCAATTAGAGAATGATGAGAGGGGCCATTATTAA 1365 0.4374 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIHSNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVIDLLGPSLEDLFNFCSRNLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARALGPSAGTSSGMPPVVANADRQTGGDEGLTAGLVSMDSVRRRMSGPMLNSSPGNNILGQSSGSSRRVAVPSGRDAFVSGESDPRTRANEVSPRAAHRISSGHRSSPLGASDAKRISSGRNASALVKNYESAVRGIEGLQLENDERGHY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0808 454 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g0808 454 PANTHER CASEIN KINASE-RELATED 9 385 - -
Lele21g0808 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lele21g0808 454 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g0808 454 FunFam Putative Casein kinase I 1 85 - -
Lele21g0808 454 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Lele21g0808 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lele21g0808 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lele21g0808 454 FunFam Casein kinase I isoform delta-like 1 308 - -
Lele21g0808 454 MobiDBLite consensus disorder prediction 349 423 - -
Lele21g0808 454 MobiDBLite consensus disorder prediction 350 373 - -
Lele21g0808 454 MobiDBLite consensus disorder prediction 304 336 - -
Lele21g0808 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele21g0808 454 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0808 Lele-ChrLele21 5298540 5303597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0808 8 213 MAP Kinase Kinase Kinase AT3G06030 28.054 3.00e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lele21g0808 Pkinase 3e-26 CL0016