Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0783 ATGAGATACAGGTCCCACCAACTGGTCCAGGACGGTTCGGTGGAGCCCGTCGTCACCGATGGCCAGAGCTGCTGGGCCAACATGCCACAGGAGCTTCTCAGAGAGGATACTGTTTTTCCTTCTTCATTCTTTGGTGTTCTGTTCAACACGCAGTGTAGACATGCCACCTGCACGGATTATATCATATCTCTTGATGCTGATGATATGTCAAAGGGAAGAAACACTTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAATTCACAATTTATGATGGCCAGCCACCTCACAAAGGGGCAAAGACTACAAAAAGCCGCTCTGTTAAACTGGGGAACCTAAATCAAGTTTCACCCACGGTTTCTACTGGTAACTATCCAGTGGCATACATCTTATATGAATTAAATGTGCTAGGCTCCAGGGGTCCAAGGAGAATGAAAGTTGTCATGGACACCATTCCTGCCTCGGCAATTCAACCAGGAGGGGTGAGACATGTGCAGACTGAGTTTTCTCCGAGCAATGTAGAAAAGGTTCCCTTATTCCCATTTTTTAGGTCAAAATCAAATAGAATTGAAAACTCTATATCTAGATCCCTGGGCAATGATGAGGTGCTAGTGTTAAAAAGTAAGCCTCCAAGGAGGCATGAACAGCTCCAATGTTGGTGTTTGAGCTTCAAAGGACGAGTGACAGTTGCTTCAGTGAAGAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGACCTTCTGGAGCAGAACATGAGAAGACCATCCTCCAATTTGGAAAAGTAGGGAAGGATTTGTTTACAATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGAAACCAAAATTGCCCGTGAATGA 888 0.4505 MRYRSHQLVQDGSVEPVVTDGQSCWANMPQELLREDTVFPSSFFGVLFNTQCRHATCTDYIISLDADDMSKGRNTYVGKLRSNFLGTKFTIYDGQPPHKGAKTTKSRSVKLGNLNQVSPTVSTGNYPVAYILYELNVLGSRGPRRMKVVMDTIPASAIQPGGVRHVQTEFSPSNVEKVPLFPFFRSKSNRIENSISRSLGNDEVLVLKSKPPRRHEQLQCWCLSFKGRVTVASVKNFQLVASPENGPSGAEHEKTILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFETKIARE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0783 295 Pfam Tub family 47 290 IPR000007 -
Lele21g0783 295 ProSitePatterns Tub family signature 1. 225 238 IPR018066 -
Lele21g0783 295 PRINTS Tubby superfamily signature 273 295 IPR000007 -
Lele21g0783 295 PRINTS Tubby superfamily signature 76 100 IPR000007 -
Lele21g0783 295 PRINTS Tubby superfamily signature 225 241 IPR000007 -
Lele21g0783 295 PRINTS Tubby superfamily signature 125 152 IPR000007 -
Lele21g0783 295 PRINTS Tubby superfamily signature 60 76 IPR000007 -
Lele21g0783 295 PRINTS Tubby superfamily signature 207 224 IPR000007 -
Lele21g0783 295 PRINTS Tubby superfamily signature 252 271 IPR000007 -
Lele21g0783 295 PANTHER TUBBY-RELATED 51 293 - -
Lele21g0783 295 Gene3D Tubby Protein; Chain A 34 295 IPR025659 -
Lele21g0783 295 SUPERFAMILY Tubby C-terminal domain-like 47 293 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0783 Lele-ChrLele21 5117057 5119899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0783 53 295 TUB Transcription Factor Family AT2G47900 68.699 3.34e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele21g0783 Tub 1.4e-85 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0783 21 5117057 5119899 Lele21g0783 21 5117057 5119899 ECH
Lele21g0783 21 5117057 5119899 Lele23g1264 23 17998072 18000968 hybridization
Lele21g0783 21 5117057 5119899 Lele24g0756 24 5067934 5070676 hybridization