Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0767 ATGGAGCGGTACGGCCGGGCAAGTGACGAGTCGCAATCCGATCCGTCACCGGAACGGACTCGAACCGGAGGCGAAACGGGGCTTGAAGAATCTATTCGGCAATTGGGATTGGTTGGTGGGGAATCGTATCCACGACGGCCTGATGAGGCTGATTGTATCTACTATTTGAAGACAGGGTTTTGTGGTTATGGCTCGCGGTGTCAGTTCAATCATCCCCGGGACCGAGGCGCGGTTATAGGAGCTTCGAGGACTGGTGCGGAGCATCCAGAGCGAGTAGGCCAGCCTATATGTCAGTATTATATGAGGACAGGATCTTGCAAATTTGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGGAGGCGTTGCTCCTGTTTCACTTAATTATTATGGATACCCACTGCGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACACGACAATGCAAGTTTGGCACAACTTGTAAGTTTCATCATCCACAGCCTGCTGGTGTTCAAGTTCCTGCCCCATTACCAGTTCCTCAAGCTTCAACTCTACCTGTACGAGTACCTTCACCATTCTATCCAACTATGCAGCCTCCATCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGACCACCTCTACTGCCAGGGTCATTAGTCCAAAATCCTTATGGGCCTATGGTAATGTCCCACGTCCCCTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAAGTCCTACAGTTCGTTCTAGTACTCCATCTATTGTTGGCTCAACGCATCTTTATGGGAATACCCAGCTACCTTCACCAGAACCTGCCTATACCGCACCTTATCAACCTACAGGTTCCTCAGTTGGTCCTTTAAGCACTAGTCAGAGAGAACAACATTCATTCCCAGAAAGACCAGGTCAACCAGAATGTCAGCATTACTTGAGAACAGGGAAGTGTAGATTTGGTACTTCCTGTAGATATCATCATCCACCTGAATTGATTGTACCAAAAGTGGTCCTTAGTCCTGTGGGTCTTCCTATGTGCCTGGGTGCACCGCCTTGCATTCATTATGCGCAGTGGGGAGTATGTAAGTTCGGTCCTGCATGCAAGTTTGATCATCCTATGGGAGCATTGGCTTACAGTCCATCTGCTTCTTCCCTTGTTAATATGCCAGTTGTTTCCATTCCTGTGGGTTCATCGATCAGTACTCTTGCACCATCGTCCTCATCATCAGAGTTGCAGCCTGAACTTAGTCCTGGTTCAAGCAAGGAGCACGGATCATTCAGCATGTCTTCGTCAATGAGCACATCTACTGGGTCAGTTGGCTTGGCGTTGTCATCTAGTGGAACCGTTTCAGAGTCAAATACTCAAACATCCACCCAAAGTTCTGTTACGGTAGCGACTCCCACAATCACGACAAGCAGCGCTGTCTCTCATACCTCAAGCTAA 1437 0.483 MERYGRASDESQSDPSPERTRTGGETGLEESIRQLGLVGGESYPRRPDEADCIYYLKTGFCGYGSRCQFNHPRDRGAVIGASRTGAEHPERVGQPICQYYMRTGSCKFGASCKYHHPRQGGGVAPVSLNYYGYPLRPDEKECSYYVKTRQCKFGTTCKFHHPQPAGVQVPAPLPVPQASTLPVRVPSPFYPTMQPPSGPSSQQYGVMVARPPLLPGSLVQNPYGPMVMSHVPFSGWNPYQAPTSPTVRSSTPSIVGSTHLYGNTQLPSPEPAYTAPYQPTGSSVGPLSTSQREQHSFPERPGQPECQHYLRTGKCRFGTSCRYHHPPELIVPKVVLSPVGLPMCLGAPPCIHYAQWGVCKFGPACKFDHPMGALAYSPSASSLVNMPVVSIPVGSSISTLAPSSSSSELQPELSPGSSKEHGSFSMSSSMSTSTGSVGLALSSSGTVSESNTQTSTQSSVTVATPTITTSSAVSHTSS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0767 478 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Lele21g0767 478 SUPERFAMILY CCCH zinc finger 137 164 IPR036855 GO:0046872
Lele21g0767 478 Gene3D - 44 120 - -
Lele21g0767 478 Gene3D - 121 170 - -
Lele21g0767 478 SUPERFAMILY CCCH zinc finger 49 74 IPR036855 GO:0046872
Lele21g0767 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Lele21g0767 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Lele21g0767 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Lele21g0767 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Lele21g0767 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Lele21g0767 478 SUPERFAMILY CCCH zinc finger 91 119 IPR036855 GO:0046872
Lele21g0767 478 MobiDBLite consensus disorder prediction 256 297 - -
Lele21g0767 478 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Lele21g0767 478 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele21g0767 478 PANTHER PROTEIN PHOSPHATASE RELATED 38 406 - -
Lele21g0767 478 MobiDBLite consensus disorder prediction 400 478 - -
Lele21g0767 478 MobiDBLite consensus disorder prediction 1 16 - -
Lele21g0767 478 Gene3D - 289 375 - -
Lele21g0767 478 MobiDBLite consensus disorder prediction 256 303 - -
Lele21g0767 478 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lele21g0767 478 MobiDBLite consensus disorder prediction 1 31 - -
Lele21g0767 478 ProSiteProfiles Zinc finger C3H1-type profile. 345 372 IPR000571 GO:0046872
Lele21g0767 478 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele21g0767 478 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Lele21g0767 478 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lele21g0767 478 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Lele21g0767 478 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Lele21g0767 478 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Lele21g0767 478 SUPERFAMILY CCCH zinc finger 347 373 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0767 Lele-ChrLele21 5025837 5030357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0767 1 437 C2H2 Transcription Factor Family AT5G18550 54.783 3.49e-143 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele21g0767 zf-CCCH 9.7e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0767 21 5025837 5030357 Lele23g1280 23 18097527 18102194 hybridization
Lele21g0767 21 5025837 5030357 Lele24g0736 24 4931169 4935752 hybridization